Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2034 ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTGTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTCTTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA 546 54.21 MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPILQDDQGIFFDGVGNWDTLQWCM 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32346683 32347228 - CrPI670011_05g020340.1 Cre05g2034 498547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2034 181 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 MobiDBLite consensus disorder prediction 1 31 - -
Cre05g2034 181 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Cre05g2034 181 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cre05g2034 181 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 MobiDBLite consensus disorder prediction 110 132 - -
Cre05g2034 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 131 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cre05g2034 181 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2034 181 MobiDBLite consensus disorder prediction 89 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0769 Cre-Chr4:26258651 Cre05g2034 Cre-Chr5:32346683 5.30E-28 dispersed
Cre05g2034 Cre-Chr5:32346683 Cre11g1080 Cre-Chr11:8259520 2.10E-30 dispersed
Cre05g2034 Cre-Chr5:32346683 Cre08g1414 Cre-Chr8:27121091 2.20E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53739 PF00847 AP2 3.00E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2034 - - - 0.0