Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2034 | ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTGTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTCTTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA | 546 | 54.21 | MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPILQDDQGIFFDGVGNWDTLQWCM | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32346683 | 32347228 | - | CrPI670011_05g020340.1 | Cre05g2034 | 498547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2034 | 181 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cre05g2034 | 181 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677(InterPro) | |
Cre05g2034 | 181 | FunFam | Ethylene-responsive transcription factor 2 | 32 | 91 | - | - | |
Cre05g2034 | 181 | Pfam | AP2 domain | 34 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | MobiDBLite | consensus disorder prediction | 110 | 132 | - | - | |
Cre05g2034 | 181 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 4 | 131 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cre05g2034 | 181 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2034 | 181 | MobiDBLite | consensus disorder prediction | 89 | 132 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0769 | Cre-Chr4:26258651 | Cre05g2034 | Cre-Chr5:32346683 | 5.30E-28 | dispersed | |
Cre05g2034 | Cre-Chr5:32346683 | Cre11g1080 | Cre-Chr11:8259520 | 2.10E-30 | dispersed | |
Cre05g2034 | Cre-Chr5:32346683 | Cre08g1414 | Cre-Chr8:27121091 | 2.20E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53739 | PF00847 | AP2 | 3.00E-15 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2034 | - | - | - | 0.0 |