Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2035 ATGAGTTTTGCTTGGTCTACTGCTTTGCTCGAGTTTGTCATGCTGGGAGTTCCATATTTTATGCTCATACAACTGTATCCTTGTATTAAAGATCCTTCATGTCCAAGGCGAAGGGGGCCGATTAGAGAGATCGAACTCCATGAAACATCTTCCTCCTCATCGCAACGGCGACTCCCAAATCGTGCTCCTCTCTTCCTCCGCCGCTCTCTTAACTTAGCCTTTCAATCAGTCAACTGCTTTATTCTCTCCGGCCGACGGGTTATCATGGACGTCGATCCTCGTTACTACGACCACATCGCTGTCAATGATGGTGATGTTCAGAACATTGTTTTATCGTACCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTACCTGTACTGGGCTTAAGCAGCACACGGATTTTCTTGTTGACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAGGCCATTGAGTTAACAGAAGAGGTAGCACATGGTTTACTTGAGAAGAATGAGGACCTGCATTTTGATCTTTTAAGTCTTCATTTTGTTGAACTTGTTTGCTCTAGGAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCTCCTTTCGGAAAGTTGCATAAATATGTGGAAAAACTTGAAGATTTCATGGCCCTCCTTGCTTACGAAGAACCAGAGAAGTCTCCAATGTTTCATCTGCTTAGTGTGGATTACCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGCACATGGAAATTTGCCGAGCTATACGGCAATGGAAAGGCTGATAAAGCAGGCGACTGTAGTTAGACAGTCCTTGAGCCAAGAGCTGGGCAAGAGTTCGGTCAGGCTCACAGCAACGAGAAGTAACCAGCTTCAGAACTTGTTGCCACCCACGGTTGTGGTATGGAAGATTGGTGTCCTCTCTTCATATGCTTTAGGTGCCCGTGTAGGCCATAAACTAAGTCATCTGGGTCTCCTGAGCTTGTTCGTTTCCTTTCAGTTTGGTGACCTCGTTGTCCTAATGGCTTGTATTGTGATTGTACATGCTTGTCCAGTTACACCATGGGCTCATCGGTGGCACACCTCGCTGCCTGTTCATGATTCTGCAGTAGATCCCGAAGTCCCAACTCCGAATCATTTCCGTTTTTCCGGGATAATGGTATCGATTCTTTGTCTTCCATCGTCTTCCTCGTATGTTTTGCATGACAAGAGCTTCTCCTCTAGCTTCTTCCCAAAGAGGCGTTACGGAAACAGAGGTTTCCCTCGGTATTTGAGCTACTGCTCAATTACGTGCAAATTAGCTAGGGTCGTGGACTCTTCAGCTAACCCAGCTACATTGACAAAAGAAGCTCATAAGTATTTTGATCAAGCTATCATAACAGTTCGTTCAGGAGATGGAGGCCACGGTACAGTTCTTAGTATGCCCAACCAACAAACAAGCAAGTCCCAAGGAAAACATGGGAAGGAGAAGGACAAGGCGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGACGTGGTAATTTATGCTGATGAGGGGAAAGACTCGCTGCTGGAGTTTCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAGTGGATTTGCTGCCCCAACTCTGCGTATTCCCGTTCCTATAGGTACTGTTGTAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTGGTCCATCCAGGTGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCTTGATAGATACGCCAGAGAGTAGAAGGAAAAGGTTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTTCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGTTTGGAGTTGATTCTTCGGGTAGTTGCCGATGTCGGTCTGATTGGACTTCCCAATGCTGGAAAATCAACACTTCTTGCAGCCATTACTCTTGCAAAACCCGATATCGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGATGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCAGATTTACCAGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGTCTTGGTCGCAACTTCCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTTGATGCAGCTGCAGAGAACCCTGTCGATGATTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTTGAAAGACCGTATGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAGGGATAGGCTTCCATCCATAACTGAAGAAATATTGAGAATTGGAACTGATGATCGTTATCCTGAGCAAATGGGATCCGAAAACAGTGTACAATCATCAGTTCTAGAAGGTGATCTTGCAACTGTTTCTTCTTTGGGAATTCCAGTTGCAGATGAAAAGGATAAAGAGATTGAAGACTATCCCCGTCCTCTTTCTGTTGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTCAATGTTGGAAGAGATTCGAGCAGCATTGAGGAAGTGCAGAGATTCCGATGGTTCGGTAACTGGGTGGGAAATTAGCATTTTTGAAGGCAGCTGCTTGTTGATATATGATGTGGTTCAGCCCTCAGTAGATAGCAGTGTTTTTGAAATGTATCATTCCCTATGTTAG 2790 44.52 MSFAWSTALLEFVMLGVPYFMLIQLYPCIKDPSCPRRRGPIREIELHETSSSSSQRRLPNRAPLFLRRSLNLAFQSVNCFILSGRRVIMDVDPRYYDHIAVNDGDVQNIVLSYLVHNCYKETAESFTTCTGLKQHTDFLVDMEKRKRIYDFAVEGNALKAIELTEEVAHGLLEKNEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILAHGNLPSYTAMERLIKQATVVRQSLSQELGKSSVRLTATRSNQLQNLLPPTVVVWKIGVLSSYALGARVGHKLSHLGLLSLFVSFQFGDLVVLMACIVIVHACPVTPWAHRWHTSLPVHDSAVDPEVPTPNHFRFSGIMVSILCLPSSSSYVLHDKSFSSSFFPKRRYGNRGFPRYLSYCSITCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGKHGKEKDKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHSGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRKRLMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVDDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGTDDRYPEQMGSENSVQSSVLEGDLATVSSLGIPVADEKDKEIEDYPRPLSVVGVSVLKGINISSMLEEIRAALRKCRDSDGSVTGWEISIFEGSCLLIYDVVQPSVDSSVFEMYHSLC 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32351857 32362552 - CrPI670011_05g020350.1 Cre05g2035 498548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2035 929 MobiDBLite consensus disorder prediction 479 506 - -
Cre05g2035 929 Pfam GTP1/OBG 523 619 IPR006169 -
Cre05g2035 929 ProSitePatterns GTP1/OBG family signature. 722 735 IPR006074 GO:0005525(InterPro)
Cre05g2035 929 ProSiteProfiles Obg domain profile. 462 661 IPR006169 -
Cre05g2035 929 SUPERFAMILY Obg GTP-binding protein N-terminal domain 464 626 IPR036726 -
Cre05g2035 929 SMART toby_final6 194 289 IPR013144 -
Cre05g2035 929 Gene3D GTP1/OBG domain 463 660 IPR036726 -
Cre05g2035 929 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 141 198 IPR006595 -
Cre05g2035 929 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 662 885 IPR031167 GO:0005525(InterPro)
Cre05g2035 929 Pfam 50S ribosome-binding GTPase 663 790 IPR006073 GO:0005525(InterPro)
Cre05g2035 929 SMART ctlh 141 198 IPR006595 -
Cre05g2035 929 PRINTS GTP1/OBG GTP-binding protein family signature 720 735 IPR006073 GO:0005525(InterPro)
Cre05g2035 929 PRINTS GTP1/OBG GTP-binding protein family signature 737 755 IPR006073 GO:0005525(InterPro)
Cre05g2035 929 PRINTS GTP1/OBG GTP-binding protein family signature 685 703 IPR006073 GO:0005525(InterPro)
Cre05g2035 929 PRINTS GTP1/OBG GTP-binding protein family signature 664 684 IPR006073 GO:0005525(InterPro)
Cre05g2035 929 CDD Obg 662 800 IPR031167 GO:0005525(InterPro)
Cre05g2035 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 885 IPR027417 -
Cre05g2035 929 Gene3D - 661 892 IPR027417 -
Cre05g2035 929 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 446 888 IPR045086 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005739(PANTHER)
Cre05g2035 929 ProSiteProfiles LIS1 homology (LisH) motif profile. 102 134 IPR006594 GO:0005515(InterPro)
Cre05g2035 929 Pfam CTLH/CRA C-terminal to LisH motif domain 142 283 IPR024964 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2035 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0723 Cre-Chr5:6406690 Cre05g2035 Cre-Chr5:32351857 6.90E-53 dispersed
Cre05g2035 Cre-Chr5:32351857 Cre05g2838 Cre-Chr5:39017421 1.40E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31