Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2057 ATGGGTTCTCTAATGGCTGGTTGGGACTCCCCGGCGACTGACCCCCAAGAAGTGAGTCACCGGAGGAATAAATCGTTGACAAAAGAAGAGATTGAAGCGTTCTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTAAGAGCCATTTTAAGGCCATATGAGAGCTATGAGGAAAAGAAAATGGAATATGGTGGAAATCTTCAGAGATCAGCCTCTATGCCACCATTCAATACAAAGAAGGGTTTATTATTGGACATGGAATCTGAAACTAAGCTAGAAAAGCCGAAGAAAAACGCTTGGTGGAGAAGAAGCAACTGGGCGTTTCTAAACGAACCGCCGGAGACGGAAGGATCTGGTAACAGCTACGTGTCGCAGTTCCACGTGGCAAACATGGCGGCTTCCAGACTTGGTCGTGGTGGCATCAGTGCTTGA 432 46.53 MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKMEYGGNLQRSASMPPFNTKKGLLLDMESETKLEKPKKNAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32551671 32552577 - CrPI670011_05g020570.1 Cre05g2057 498570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2057 143 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1 133 - -
Cre05g2057 143 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2057 Cre-Chr5:32551671 Cre08g1440 Cre-Chr8:27350462 7.70E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g962 . . . Bda03g00264 . . . . . . Cma01g01917 . Car01g01498 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01687 Csa03g04226 Chy04g00488 . Blo17g00794 . . . . . . . Sed13g1636 Cmo01g01980 . . . . . . Cpe02g00119 Bhi09g02155 Tan01g4950 Cmetu04g2630 . Hepe01g1671 Mch11g0174 . Cla05g01925 Cam05g2063 Cec05g2075 Cco05g2126 Clacu05g2057 Cmu05g1934 Cre05g2057 . . . Cme04g00547
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003186 1 2 1 0 0 2 2 2 2 2 2 2 2 2 2 1 2 0 2 2 2 2 2 2 2 2 2 3 2 1 51