Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2058 ATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACCACAACCAAGTGTGGACCTCACCACGATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGTTAATCACTTGGATTATTTGTTTCTCTCGTTGTTTTCTCCGCTGCTGTTCTCATTTTTTGCGGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGCACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCCGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1569 47.93 MQLQRTCIRLPTERPPQPSVDLTTINQQKGSTSASHIGEHGYFGVSDYREESSMSSTDENRETGGGGGDGDGETAAADNGDDGGDDLLLITWIICFSRCFLRCCSHFLRKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32570904 32574222 + CrPI670011_05g020580.1 Cre05g2058 498571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2058 522 ProSitePatterns Tub family signature 2. 507 522 IPR018066 -
Cre05g2058 522 Pfam F-box-like 172 214 IPR001810 GO:0005515(InterPro)
Cre05g2058 522 Pfam Tub family 233 517 IPR000007 -
Cre05g2058 522 MobiDBLite consensus disorder prediction 17 35 - -
Cre05g2058 522 MobiDBLite consensus disorder prediction 1 78 - -
Cre05g2058 522 Gene3D - 166 220 - -
Cre05g2058 522 PANTHER TUBBY-RELATED 136 521 - -
Cre05g2058 522 SUPERFAMILY Tubby C-terminal domain-like 221 522 IPR025659 -
Cre05g2058 522 Gene3D Tubby Protein; Chain A 230 522 IPR025659 -
Cre05g2058 522 CDD F-box_AtTLP-like 172 216 - -
Cre05g2058 522 PRINTS Tubby superfamily signature 288 304 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 479 498 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 432 449 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 450 466 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 500 522 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 304 328 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 352 379 IPR000007 -
Cre05g2058 522 SUPERFAMILY F-box domain 161 215 IPR036047 GO:0005515(InterPro)
Cre05g2058 522 MobiDBLite consensus disorder prediction 130 163 - -
Cre05g2058 522 MobiDBLite consensus disorder prediction 130 148 - -
Cre05g2058 522 ProSitePatterns Tub family signature 1. 450 463 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2058 K19600 - - csv:101222500 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2058 Cre-Chr5:32570904 Cre08g0325 Cre-Chr8:10012404 1.10E-116 dispersed
Cre05g1169 Cre-Chr5:11269851 Cre05g2058 Cre-Chr5:32570904 3.70E-118 transposed
Cre08g0649 Cre-Chr8:19438036 Cre05g2058 Cre-Chr5:32570904 1.50E-119 transposed
Cre09g0327 Cre-Chr9:3193308 Cre05g2058 Cre-Chr5:32570904 1.50E-12 transposed
Cre04g1574 Cre-Chr4:34300866 Cre05g2058 Cre-Chr5:32570904 3.40E-145 wgd
Cre05g2058 Cre-Chr5:32570904 Cre07g1208 Cre-Chr7:25326144 1.00E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g960 Blo01g01567 Blo12g00905 Bda01g00525 Bda03g00263 Bpe02g00385 Bpe04g00217 Bma04g00212 . . . Cma01g01916 Cma09g00148 Car01g01497 . . Cpe06g00104 . . . . . . . . . . . . . . . Cone4ag1918 Cone7ag1830 . . Lsi04g01686 Csa03g04225 Chy04g00489 . . . . . . . . . . Cmo01g01979 Cmo09g00146 . . . Car09g00133 . Cpe02g00120 . . . . . . . Cla05g01926 Cam05g2064 Cec05g2076 Cco05g2127 Clacu05g2058 Cmu05g1935 Cre05g2058 . . . Cme04g00548
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0325 . 1 431 TUB Transcription Factor Family AT1G76900 73.0 8.9e-179 623.6
Cre08g0649 . 1 432 TUB Transcription Factor Family AT1G76900 69.6 8.3e-169 590.5
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.1e-168 590.1
Cre05g0707 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 1.6e-111 400.2
Cre05g1169 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.8e-102 367.1
Cre08g0325 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 5.2e-94 341.3
Cre08g0649 . 175 432 TUB Transcription Factor Family AT1G25280 70.4 2.6e-93 339.0
Cre05g0707 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 5.2e-70 261.5
Cre05g2058 . 295 522 TUB Transcription Factor Family AT1G25280 53.8 1.6e-66 250.0
Cre04g1574 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 7.3e-64 241.1
Cre06g1299 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.6e-53 206.1
Cre05g0707 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 2.1e-96 349.4
Cre06g1299 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.5e-86 316.6
Cre08g0325 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 4.1e-84 308.5
Cre08g0649 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.6e-83 306.6
Cre05g1169 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 3.9e-82 302.0
Cre05g2058 . 231 522 TUB Transcription Factor Family AT5G18680 51.9 3.7e-77 285.4
Cre07g1395 . 117 383 TUB Transcription Factor Family AT5G18680 51.0 2.1e-67 253.1
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.3e-138 490.0
Cre05g2058 . 117 522 TUB Transcription Factor Family AT2G18280 59.0 4.9e-125 444.9
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 1.5e-118 423.3
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 3.2e-116 415.6
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 4.2e-116 415.2
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G18280 50.9 9.6e-113 404.1
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 7.1e-100 361.3
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G18280 52.3 1.2e-94 344.0
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 5.7e-161 564.3
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.3e-146 515.8
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.5e-132 469.9
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 1.4e-130 463.4
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 4.0e-130 461.8
Cre05g2058 . 126 522 TUB Transcription Factor Family AT2G47900 55.4 5.1e-117 418.3
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.0e-114 408.7
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G47900 51.8 3.6e-99 359.0
Cre09g0327 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 5.5e-73 271.6
Cre08g0325 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cre05g1169 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 4.6e-146 514.6
Cre08g0649 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 2.0e-141 499.2
Cre05g0707 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.4e-105 380.2
Cre05g2058 . 184 522 TUB Transcription Factor Family AT1G43640 50.1 2.5e-99 359.4
Cre06g1299 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.7e-93 339.3
Cre05g2058 . 150 522 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cre04g1574 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 2.5e-121 432.6
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 5.0e-114 408.3
Cre08g0325 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.7e-112 402.5
Cre08g0649 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 2.7e-112 402.5
Cre05g0707 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.7e-104 375.9
Cre07g1395 . 1 383 TUB Transcription Factor Family AT1G53320 70.0 1.1e-153 540.0
Cre05g0707 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.1e-97 351.7
Cre06g1299 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.9e-82 301.6
Cre05g1169 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 1.9e-81 299.7
Cre08g0649 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 5.4e-81 298.1
Cre08g0325 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.6e-80 295.0
Cre05g2058 . 235 522 TUB Transcription Factor Family AT3G06380 52.9 3.9e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53741 PF01167 Tub 2.80E-105 CL0395 Cre TF