Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2058 ATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACCACAACCAAGTGTGGACCTCACCACGATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGTTAATCACTTGGATTATTTGTTTCTCTCGTTGTTTTCTCCGCTGCTGTTCTCATTTTTTGCGGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGCACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCCGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1569 47.93 MQLQRTCIRLPTERPPQPSVDLTTINQQKGSTSASHIGEHGYFGVSDYREESSMSSTDENRETGGGGGDGDGETAAADNGDDGGDDLLLITWIICFSRCFLRCCSHFLRKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32570904 32574222 + CrPI670011_05g020580.1 Cre05g2058 498571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2058 522 ProSitePatterns Tub family signature 2. 507 522 IPR018066 -
Cre05g2058 522 Pfam F-box-like 172 214 IPR001810 GO:0005515(InterPro)
Cre05g2058 522 Pfam Tub family 233 517 IPR000007 -
Cre05g2058 522 MobiDBLite consensus disorder prediction 17 35 - -
Cre05g2058 522 MobiDBLite consensus disorder prediction 1 78 - -
Cre05g2058 522 Gene3D - 166 220 - -
Cre05g2058 522 PANTHER TUBBY-RELATED 136 521 - -
Cre05g2058 522 SUPERFAMILY Tubby C-terminal domain-like 221 522 IPR025659 -
Cre05g2058 522 Gene3D Tubby Protein; Chain A 230 522 IPR025659 -
Cre05g2058 522 CDD F-box_AtTLP-like 172 216 - -
Cre05g2058 522 PRINTS Tubby superfamily signature 288 304 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 479 498 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 432 449 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 450 466 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 500 522 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 304 328 IPR000007 -
Cre05g2058 522 PRINTS Tubby superfamily signature 352 379 IPR000007 -
Cre05g2058 522 SUPERFAMILY F-box domain 161 215 IPR036047 GO:0005515(InterPro)
Cre05g2058 522 MobiDBLite consensus disorder prediction 130 163 - -
Cre05g2058 522 MobiDBLite consensus disorder prediction 130 148 - -
Cre05g2058 522 ProSitePatterns Tub family signature 1. 450 463 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2058 Cre-Chr5:32570904 Cre08g0325 Cre-Chr8:10012404 1.10E-116 dispersed
Cre05g1169 Cre-Chr5:11269851 Cre05g2058 Cre-Chr5:32570904 3.70E-118 transposed
Cre08g0649 Cre-Chr8:19438036 Cre05g2058 Cre-Chr5:32570904 1.50E-119 transposed
Cre09g0327 Cre-Chr9:3193308 Cre05g2058 Cre-Chr5:32570904 1.50E-12 transposed
Cre04g1574 Cre-Chr4:34300866 Cre05g2058 Cre-Chr5:32570904 3.40E-145 wgd
Cre05g2058 Cre-Chr5:32570904 Cre07g1208 Cre-Chr7:25326144 1.00E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53741 PF01167 Tub 2.80E-105 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2058 K19600 - csv:101222500 751.125