Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2079 ATGTGTAAATCAACCTTTTCTTTCGGCCTTAGGGTTTATAGGAATCGGCTATATTGCTCAATCAAGGACGCGGAGTTTTACGCAGTCGGATTAGTTGCATCGAACGTTATCGGTTCTATCTGGAAAAAGCCTCTACGTAAATCTTGTTTCTATGGGAGGAGATTTTTGGATTCGGATTTTGAACTCCAGGATTGTTGTGAAGTGTGCGGAAATTTCTTGAACCCTTCATTTGAGATTCTGCATTCTGTTTACATATGGGAGCAGATTAAAGTCTGTTTAAATATCTGTGAGAAGACGTGCGAAGAACAACATTACATACAAATCAAGAGCAAAAAAGAACGGTATATGCGTGCAGCAAAACCCGAATCAATGGTGAGATATCAACCTCAAGAATTCTCAATTCAAGAGTGCGACACGTGGCGTGTCCTTGACCGTTGGTTCATTCCACTTTTTGCTTTCCGAGCGTGCACCGGCGGTGGCGATAGCAAGAAGAATATCCAGCACTTGTTCCACAATGTATGGCGAAACAGAGAAATAGCGGTGACGACCACTGACACTGACCTAAAAGAATCTGGCTTAAGGCCAGGAAGAAGCGTGGAAGACGAACTTGATTCCAATTCTGCACTATTGACTTGTTTAAACCCTAATTATTTGGAATCTGCTGGCGATTTTTTACTCCGGCTCCATCTTCCAGCAACTCTAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAGCAGATCACATCGAAGGTCAATGAACTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGATCTATGTATAAGCCTGAGGAAATTCGTTGGCCCGAAATAGCACTTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAAGTGTTCTTATAATGAAGCCAGGAAAGCAGAACACGGCATCGATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTCCCAATCAAATCTGCACGGGAGACCGTCAACATCTTGCAGAACCACTACCCCGAGAGACTAGCCCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAACGTTCTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCGTCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGGTTAATGATTCAAGATGATATTAAATGTGCTGCCTTCTGGGAACATGGTGAAAAGCAACACCATATTGTCAATGGCTACTCCAGTGCAGTGGTGGCTCCAGAGTGA 1563 42.55 MCKSTFSFGLRVYRNRLYCSIKDAEFYAVGLVASNVIGSIWKKPLRKSCFYGRRFLDSDFELQDCCEVCGNFLNPSFEILHSVYIWEQIKVCLNICEKTCEEQHYIQIKSKKERYMRAAKPESMVRYQPQEFSIQECDTWRVLDRWFIPLFAFRACTGGGDSKKNIQHLFHNVWRNREIAVTTTDTDLKESGLRPGRSVEDELDSNSALLTCLNPNYLESAGDFLLRLHLPATLMFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPEEIRWPEIALESETGKLYRASFHDREGRSVLIMKPGKQNTASIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFETFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCAAFWEHGEKQHHIVNGYSSAVVAPE 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32709282 32715709 - CrPI670011_05g020790.1 Cre05g2079 498592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2079 520 Pfam CRAL/TRIO, N-terminal domain 276 300 IPR011074 -
Cre05g2079 520 SMART sec14_4 321 476 IPR001251 -
Cre05g2079 520 Pfam CRAL/TRIO domain 324 473 IPR001251 -
Cre05g2079 520 SUPERFAMILY CRAL/TRIO domain 315 491 IPR036865 -
Cre05g2079 520 FunFam Phosphatidylinositol transfer protein 3 237 508 - -
Cre05g2079 520 CDD SEC14 333 474 IPR001251 -
Cre05g2079 520 SUPERFAMILY CRAL/TRIO N-terminal domain 244 317 IPR036273 -
Cre05g2079 520 PANTHER GH16843P 241 504 IPR052578 GO:0008526(PANTHER)
Cre05g2079 520 SMART CRAL_TRIO_N_2 276 301 IPR011074 -
Cre05g2079 520 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 315 479 IPR001251 -
Cre05g2079 520 Gene3D - 237 508 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2079 K26544 - - csv:101203752 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2079 Cre-Chr5:32709282 Cre07g1290 Cre-Chr7:27077399 7.20E-108 dispersed
Cre04g0586 Cre-Chr4:23040602 Cre05g2079 Cre-Chr5:32709282 3.40E-71 transposed
Cre11g1951 Cre-Chr11:31301400 Cre05g2079 Cre-Chr5:32709282 5.10E-70 transposed
Cre04g1561 Cre-Chr4:34219556 Cre05g2079 Cre-Chr5:32709282 1.10E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82