Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2088 ATGATCAAAGGACTTTCCTATCGTCGGATCACTGGTAACACCAATGATATCCACCGTCTGAATGCAGAGGCACAAGAGAAGGCGATGCCGTTAACCCATGATATAATGTGTCGGGTGTTGCCTTATATCCACTGGTGGTCCGAAGAGTATGGAAAGACGTTTGTGTACTGGTTCGGGTCAACACCCAGATTGACCATATCTGACCTGGATGTGATTAAGGAAGTGCTTATGAATACGAATGGGTCTTTTACAAAGACCAAGGCCAGTCGGTTTGTGAAGTTTCTGATTGGAAAAGGACTTGTCGGACTCGATGGCGAAAAATGGGCCCTCCATAGGAGGATTGCAAATCAGGCTTTCACTATGGAGCGTGTGAGGGAATGGTTACCAGAGATTAGATTGAGTATTTGTAGTGTATTGGAGAAATGGAAAGAGATGAAGGGAGGGAAGGAGGAGTTTGAATTAGATGTCCATAAACAACTCCGTCTCGTTTCAGCAGACAACGAGAATGGAGAAGAAGAAATGCTTGGAGTGGAAGAAATCATAGATGAATACAAGACATTCTATTTTGCAGGAATGGAAACAACTGCAAATCTATTAACTTGGGCACTTCTACTACTAGCACAACATCAAGAATGGCAACACCGAGCTAGAGAAGAAGTCATCAAAGTTTGCGGCCACAAGACATCCCCTACGTCTAACCATTTAACTCAACTTAAACTAATGAATATGATAATCAATGAAACACTTCGACTTTATCCTCCAGCGTTGTTGTTGGGGCCGCGGATAACAAAAGGAATGACTATAGGAAGCATCGATGTTTCGAAAGGCACACAACTTCAAATTGTAGTGGCTGCAATCCACCACGACAAAGAGATTTGGGGAGAAGATGCAAGCGAATTCAACCCTCTAAGATTTAGTGCACCTAGGAAGCATCTGGCTTCATTTATGCCATTTGGTTTGGGTCCTAGAATTTGTGTAGGCCAACATTTGGCTTTGATTGAGGCCAAAGTTGCATTGGCTATGATAATTCAACGATTCTCTTTTACGATCTCTCCAACCTACATGCATGCCCCTATGATGTTGGTAACCTTACAACCTCAGTTTGGTGTTCAACTCCTCATTAAGAGCTTATGGAATTGA 1140 42.81 MIKGLSYRRITGNTNDIHRLNAEAQEKAMPLTHDIMCRVLPYIHWWSEEYGKTFVYWFGSTPRLTISDLDVIKEVLMNTNGSFTKTKASRFVKFLIGKGLVGLDGEKWALHRRIANQAFTMERVREWLPEIRLSICSVLEKWKEMKGGKEEFELDVHKQLRLVSADNENGEEEMLGVEEIIDEYKTFYFAGMETTANLLTWALLLLAQHQEWQHRAREEVIKVCGHKTSPTSNHLTQLKLMNMIINETLRLYPPALLLGPRITKGMTIGSIDVSKGTQLQIVVAAIHHDKEIWGEDASEFNPLRFSAPRKHLASFMPFGLGPRICVGQHLALIEAKVALAMIIQRFSFTISPTYMHAPMMLVTLQPQFGVQLLIKSLWN 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32805577 32808052 + CrPI670011_05g020880.1 Cre05g2088 498601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2088 379 PRINTS P450 superfamily signature 190 207 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS P450 superfamily signature 325 336 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS P450 superfamily signature 243 254 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS P450 superfamily signature 316 325 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PANTHER CYTOCHROME P450 FAMILY MEMBER 172 370 IPR050665 GO:0004497(PANTHER)
Cre05g2088 379 Gene3D Cytochrome P450 34 163 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 Gene3D Cytochrome P450 164 377 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 318 327 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cre05g2088 379 Pfam Cytochrome P450 43 163 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 Pfam Cytochrome P450 164 354 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 SUPERFAMILY Cytochrome P450 31 375 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS E-class P450 group IV signature 309 325 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS E-class P450 group IV signature 238 254 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS E-class P450 group IV signature 325 343 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre05g2088 379 PRINTS E-class P450 group IV signature 181 207 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2088 Cre-Chr5:32805577 Cre05g2091 Cre-Chr5:32820222 1.60E-157 dispersed
Cre05g2088 Cre-Chr5:32805577 Cre05g2089 Cre-Chr5:32810828 4.40E-155 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g915 . . . . Bpe02g00400 . . . . . . Cma09g00170 . . . Cpe06g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00166 . . . Car09g00149 . . . . . . . . . Cla05g01956 Cam05g2103 Cec05g2113 Cco05g2168 . Cmu05g1970 Cre05g2088 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002034 1 3 1 2 0 4 1 3 4 3 3 2 1 4 4 0 3 3 1 3 3 1 0 1 2 3 1 2 2 5 66