Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2130 ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGGTGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGCAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGAAATGGATGTTCTCCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGACTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTCAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGGAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATTATCACGAGGCAATCACCATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGATGCAAAAGAGCTTGCCCTTCTCAATTGCTAA 798 45.36 MNTPSSLPDLSLQISLPMSMVLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGEMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKVEGSNGDYHEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33126816 33130175 - CrPI670011_05g021300.1 Cre05g2130 498643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2130 265 MobiDBLite consensus disorder prediction 24 47 - -
Cre05g2130 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 252 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cre05g2130 265 FunFam Myb family transcription factor 97 155 - -
Cre05g2130 265 SUPERFAMILY Homeodomain-like 96 153 IPR009057 -
Cre05g2130 265 MobiDBLite consensus disorder prediction 29 47 - -
Cre05g2130 265 Pfam Myb-like DNA-binding domain 100 151 IPR001005 -
Cre05g2130 265 Gene3D - 98 155 - -
Cre05g2130 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 152 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2130 Cre-Chr5:33126816 Cre09g1112 Cre-Chr9:11664730 4.00E-30 dispersed
Cre05g2130 Cre-Chr5:33126816 Cre08g1490 Cre-Chr8:27707442 9.80E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53742 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2130 - - - 0.0