Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2188 ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTCCCTTATTCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGTTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 675 46.52 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLFINNPPYNNFPQSTVSFPATTSRWRNSGVETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33610785 33611459 - CrPI670011_05g021880.1 Cre05g2188 498701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2188 224 MobiDBLite consensus disorder prediction 30 53 - -
Cre05g2188 224 FunFam BHLH transcription factor 134 197 - -
Cre05g2188 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Cre05g2188 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983(InterPro)
Cre05g2188 224 CDD bHLH_AtIND_like 132 188 - -
Cre05g2188 224 Gene3D - 134 196 IPR036638 GO:0046983(InterPro)
Cre05g2188 224 MobiDBLite consensus disorder prediction 32 53 - -
Cre05g2188 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 201 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2188 224 SMART finulus 137 186 IPR011598 GO:0046983(InterPro)
Cre05g2188 224 Pfam Helix-loop-helix DNA-binding domain 140 181 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1180 Cre-Chr4:30400511 Cre05g2188 Cre-Chr5:33610785 1.50E-33 dispersed
Cre05g2188 Cre-Chr5:33610785 Cre09g0034 Cre-Chr9:680963 4.40E-30 dispersed
Cre02g1586 Cre-Chr2:28515524 Cre05g2188 Cre-Chr5:33610785 1.50E-40 transposed
Cre04g0783 Cre-Chr4:26439380 Cre05g2188 Cre-Chr5:33610785 1.90E-21 transposed
Cre04g1318 Cre-Chr4:31969384 Cre05g2188 Cre-Chr5:33610785 3.70E-06 wgd
Cre05g2188 Cre-Chr5:33610785 Cre08g1546 Cre-Chr8:28107261 2.70E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53745 PF00010 HLH 1.40E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2188 - - - 0.0