Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2195 ATGACTCCGACCACCGTGAATGTCCATCATCCTTCAATCCGACGCATTTCAGAATGCTTTATCAAACCAAAATGCCTTCCGGAGGAATCAAATCAGCCCTATCATTTGATTCCGGTGGATCTTGCCATGCTCTCCGCCCATTATATCCAGAAAGGCCTCCTATTCCGCAAACCTTCCCACGCCAATCACGATCCACACCCTTTTATGGTTTCTCTTCTTCACCGCCTAAAAAGTTCCCTTTCCATTGCTCTGTTTCATTTCTACCCACTTTCCGGCCGCCTTGCCACCATTAAAAATGACCAACAAGCTTCGATCTCAATTTTTGTTGACTGCGTCAACAGCCCCGGAGCCAAGTTCATCCACGCCGCCCTCGACATCACAATTTCCGATGTTCTGTCGCCGGTCGATGTGCCTTTAGTGGTCCAATCTTTCTTTGACCATGACAGGGCTGTCAACTACGACGGTCATACCATGCCTTTGCTTTCCATTCAGGTAACGGAGTTATTGGATGGAGTCTTCATCGCCTGTTCGTTCAACCATGCCATCGGCGACGGAACCTCCTACTGGAATTTCTTCAATATGTGGTCGGAAATCTTTCAAGCGCCACAATCAGATGGGCATGCTATTATTTCGATTTCCCGGCCTCCAATTCTGAAGCGGTGGTTTCCCGATGGGATTGGTCCAATGATCAGTCTCCCCTTCACCCACCCAGATCAATTTATTAGCCGATTCGAAGCACCGGAACTCAGGGAAAGAATGTTCCACTTTTCAGCAGAATCCATTGCAAGACTGAAAGCAAAAGCTAATGCAGAGTGCGATACAAAAGAAATCTCCTCCTTCCAGTCGCTGTCTGCACTTGTATGGCGGTCCATAACACGAGCCCGTGGCGTGCCGGAGAATCAAAGTTGCAGTTGCAGTATGGCGGCGAACAACAGAGGAAGATTAGACCCACCGTTGTCTGAAAACTACTTTGGGAATTTGGCTACATCAGTGAGAGCGGAAGCAAAAGCAGGGGAGTTGATTGAGCGAGGGGTGGGTTGGGCGGCGTGGAAGTTGCACGAAGCTGTGGCTCACAACACGAACAAAAAATTAAGAGAGGCACTTGACAAGTGGCTGCAATCCCCATTTACTTTTCAAGTGGGTCGTTTTTTTGACCCGTACAGCGTGTTGATGGGGAGCTCGCCCAGGTTCAACAAATATGGGAATGAATTTGGGATGGGAAAAGCAGTGGCGTTGCGGAGTGGATATGCCAACAAGTTCGACGGCAAGGTTTCTTCGTATCCAGGATATGAAGGAGGAGGAAGTGTTGATTTAGAGATCTGTTTGCTCCCACAAAATATGGCAAATCTCGAGTCTGATTTGGAGTTCATCAATGCTATCTCCTCTCCACCTCACTTGTCTTGGGAATCATGA 1413 48.27 MTPTTVNVHHPSIRRISECFIKPKCLPEESNQPYHLIPVDLAMLSAHYIQKGLLFRKPSHANHDPHPFMVSLLHRLKSSLSIALFHFYPLSGRLATIKNDQQASISIFVDCVNSPGAKFIHAALDITISDVLSPVDVPLVVQSFFDHDRAVNYDGHTMPLLSIQVTELLDGVFIACSFNHAIGDGTSYWNFFNMWSEIFQAPQSDGHAIISISRPPILKRWFPDGIGPMISLPFTHPDQFISRFEAPELRERMFHFSAESIARLKAKANAECDTKEISSFQSLSALVWRSITRARGVPENQSCSCSMAANNRGRLDPPLSENYFGNLATSVRAEAKAGELIERGVGWAAWKLHEAVAHNTNKKLREALDKWLQSPFTFQVGRFFDPYSVLMGSSPRFNKYGNEFGMGKAVALRSGYANKFDGKVSSYPGYEGGGSVDLEICLLPQNMANLESDLEFINAISSPPHLSWES 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33686526 33687938 - CrPI670011_05g021950.1 Cre05g2195 498708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2195 470 Gene3D - 239 453 IPR023213 -
Cre05g2195 470 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 458 IPR051283 -
Cre05g2195 470 Gene3D - 15 231 IPR023213 -
Cre05g2195 470 Pfam Transferase family 33 456 - -
Cre05g2195 470 FunFam Tryptamine hydroxycinnamoyl transferase 237 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2195 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2192 Cre-Chr5:33671906 Cre05g2195 Cre-Chr5:33686526 1.60E-180 dispersed
Cre05g2193 Cre-Chr5:33678043 Cre05g2195 Cre-Chr5:33686526 1.50E-173 dispersed
Cre05g2195 Cre-Chr5:33686526 Cre05g2197 Cre-Chr5:33696727 1.90E-139 dispersed
Cre05g2194 Cre-Chr5:33684265 Cre05g2195 Cre-Chr5:33686526 7.10E-197 tandem
Cre05g2195 Cre-Chr5:33686526 Cre05g2196 Cre-Chr5:33693543 7.70E-194 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g737 Blo01g01522 . . . . Bpe04g00176 Bma04g00158 . . . Cma01g01828 . . . . . . . . . . . . . . . . . . . . Cone4ag1589 . . . Lsi04g01535 Csa04g02428 . . . . . . . . . . Sed01g2681 Cmo01g01883 . . . . . . Cpe02g00189 Bhi09g03301 Tan01g4752 Cmetu07g0986 . Hepe01g1784 Mch11g0313 . Cla05g02057 Cam05g2210 Cec05g2227 Cco05g2270 Clacu05g2203 Cmu05g2069 Cre05g2195 . . Chy07g00146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000366 2 4 2 1 1 5 0 6 6 3 4 6 3 5 5 6 6 2 2 6 6 1 6 6 7 5 9 6 6 2 129