Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2198 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 52.63 MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33703466 33703921 - CrPI670011_05g021980.1 Cre05g2198 498711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2198 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 CDD AP2 29 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 MobiDBLite consensus disorder prediction 118 138 - -
Cre05g2198 151 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Cre05g2198 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2198 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 150 - -
Cre05g2198 151 MobiDBLite consensus disorder prediction 118 151 - -
Cre05g2198 151 MobiDBLite consensus disorder prediction 1 28 - -
Cre05g2198 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1539 Cre-Chr2:27713430 Cre05g2198 Cre-Chr5:33703466 1.40E-40 dispersed
Cre05g2198 Cre-Chr5:33703466 Cre08g0097 Cre-Chr8:2118342 1.20E-20 dispersed
Cre04g1321 Cre-Chr4:32028340 Cre05g2198 Cre-Chr5:33703466 1.80E-39 wgd
Cre05g2198 Cre-Chr5:33703466 Cre08g1555 Cre-Chr8:28203138 4.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53748 PF00847 AP2 2.20E-11 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2198 K09286 - csv:101219005 268.855