Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2198 | ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA | 456 | 52.63 | MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD | 151 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33703466 | 33703921 | - | CrPI670011_05g021980.1 | Cre05g2198 | 498711 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2198 | 151 | Pfam | AP2 domain | 29 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | CDD | AP2 | 29 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | PRINTS | Ethylene responsive element binding protein signature | 67 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | MobiDBLite | consensus disorder prediction | 118 | 138 | - | - | |
Cre05g2198 | 151 | FunFam | Ethylene-responsive transcription factor 2 | 27 | 86 | - | - | |
Cre05g2198 | 151 | Gene3D | AP2/ERF domain | 27 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2198 | 151 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 13 | 150 | - | - | |
Cre05g2198 | 151 | MobiDBLite | consensus disorder prediction | 118 | 151 | - | - | |
Cre05g2198 | 151 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cre05g2198 | 151 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1539 | Cre-Chr2:27713430 | Cre05g2198 | Cre-Chr5:33703466 | 1.40E-40 | dispersed | |
Cre05g2198 | Cre-Chr5:33703466 | Cre08g0097 | Cre-Chr8:2118342 | 1.20E-20 | dispersed | |
Cre04g1321 | Cre-Chr4:32028340 | Cre05g2198 | Cre-Chr5:33703466 | 1.80E-39 | wgd | |
Cre05g2198 | Cre-Chr5:33703466 | Cre08g1555 | Cre-Chr8:28203138 | 4.30E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53748 | PF00847 | AP2 | 2.20E-11 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2198 | K09286 | - | csv:101219005 | 268.855 |