Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2199 ATGAATAACAGGAATTTCGTCTGTAATCCTATGGTTGCTCTCCCATTATTACCTTCCTCTCACTTGCTGTTTTCGAATAGCGCCATTGATTTCAGGCACAGGGTCTCCATTGTTGTAAAACCCACTTTCCAGGGTTCGTGTAGATGGCGAATCCGAGCCACCGCCGAGAACGGAGCTTCATCGGCGTCGACTTCCCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTGGTGCTTTGGGATCTTGATAACAAACCCCCTCGTGGGCCGCCGTACGAGGCGGCTATGGCGCTGAAACGAGTAGGGCAACGCTTCGGACAAGTCGTCGACATGTCGGCTTACGCCAATCGCCACGCCTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGATATTCTTGAGCGTAAAGGGTTGTTCACGCCGTCCGAATCGTACGTCTGCGGGGTTTGCGGTCGCAAGTGCAAAACAAACCTAGACCTTAAGAAGCATTTCAAGCAACTTCACGAACGTGAGCGCCAGAAGAAATTGAATAGAATGAGGTCTCTCAAGGGCAAAAAGCGACAGCGTTATAAGGAAAGGTTCGTATCTGGAAACCATAAGTACAATGAAGCAGCGAGGTCTCTGATTACTCCCAAAGTTGGATATGGATTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAGACTGTAGAGGATAAGCCTCAGGCAGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGATTCTTGTTTCCGATGATTCGGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAAGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGGGCATTGGGTAGGCACGCAGATTTATGGGTTCCATGGATGGGTGTTGAAAATGGGGATATTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGATGAGAAGAAGAGACGAGGAAATGGATGGAGATGATGATGGTTTTTCAGTTTCTCGTTTCTATGGAGACACTGAAGCTGGTGATTTGGAGAGTGTAGTGGAAGAGCTTGTTTCCGCAAGTACAGAAGAGTTCAATGGCTTTAGAATTTCTGCATTTTCAGAGGGGGAAGATGAAGAAGATGATTGGGTTGAAGAAGATGTGGGATCTGACTATCTGCTAGTGATGAGTGACGAGGAAGATGGGCATTCCTGA 1254 48.09 MNNRNFVCNPMVALPLLPSSHLLFSNSAIDFRHRVSIVVKPTFQGSCRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVGQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMILVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDITEEDLVPKRWRMRRRDEEMDGDDDGFSVSRFYGDTEAGDLESVVEELVSASTEEFNGFRISAFSEGEDEEDDWVEEDVGSDYLLVMSDEEDGHS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33713498 33714751 - CrPI670011_05g021990.1 Cre05g2199 498712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2199 417 Gene3D - 158 316 - -
Cre05g2199 417 Coils Coil 180 200 - -
Cre05g2199 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cre05g2199 417 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Cre05g2199 417 CDD PIN_LabA-like 170 300 - -
Cre05g2199 417 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 51 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2199 Cre-Chr5:33713498 Cre10g0552 Cre-Chr10:5025002 2.40E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53749 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2199 - - - 0.0