Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2202 ATGGAAGCTGGGGAGGATTGTTGCGTCAAGGTCGCCGTCCACATCCGTCCGCTCATCGGCGATGAGCGCCTCCAAGGCTGTAAGGATTGCGTCACCGTTATCTCCGGGAAGCCTCAGGTACAAATTGGATCCCATTCATTTACGTTCGATCATGTCTATGGAAGCACTGGCTCACCCTCATCTTCGATGTTTGAAGAATGTGTTTCTCCGCTAGTAGATGGTCTGTTCCAAGGCTATAATGCTACCGTTCTAGCGTATGGGCAGACTGGATCTGGGAAAACTTATACAATGGGGACAGGTTTTAAGGATGGTGGTCAGACAGGAATTATACCTCAAGTCATGAATGTCTTGTTCAGCAAGATTGAAACTCTAAAGGATCAAATGGAATTTCAATTACATGTTTCTTTTATTGAGATTCTCAAGGAAGAGGTACGAGATCTGCTAGATTCTACTTTTAGCAAAGTGGAGGGTACAAATGGACATGCAGGGAAAGTAACTCTACCTGGGAAACCACCAATACAAATTCGTGAATCGTCAAATGGCGTCATCACTCTAGCAGGATCTACAGAAGTTAGTGTAAACACACTGAAAGAAATGGCTTCTTGTCTTGAGCAAGGATCACTGAGTAGGGCTACAGGAAGTACGAATATGAATAATCAGTCAAGTCGTTCGCATGCCATCTTCACCATCACATTAGAGCAAATGCGTAAACTAAATCCAGCTTTTCCTGGAGAAGGCAATATTGACAACATAAGCGAAGAGTATTTATGCGCAAAGTTGCACTTGGTAGATCTAGCTGGATCTGAACGAGCCAAGAGAACTGGTTCTGATGGTTTACGTTTCAAGGAAGGAGTTCATATAAACAAGGGTCTTCTTGCACTTGGTAATGTCATCAGCGCCCTTGGTGATGAGAAGAAGCGCAAAGAAGGAGTTCATGTCCCATATAGGGACAGTAAATTGACTCGACTCTTACAGGATTCTCTGGGTGGTAACAGCAGAACTGTTATGATAGCCTGCATCAGCCCCGCTGATATTAATGCCGAGGAAACCCTCAACACTTTGAAATATGCGAACCGAGCTCGAAATATCCAGAATAAGCCAGTTGTCAACAGGGATCCCATGTCCAATGAGATGTTAAAGATGCGACAACAACTAGAATATCTGCAGGCAGAACTTTTTGCTCGTGGAGGGTCTTCATCTGACGAAATTCAGGTTCTCAAGGAACGGATTGCCTGGCTTGAAGCAGCCAATCAGGATCTCTGTCGTGAGCTTCATGAATACCGTAGTCGATGTGGCATTGTGGAGCAATGTGAAACAGATGCCCAAGTCTGTGCCCAGGATGGTATAAATTGCTCTGACAAAACTGATGGGCTTATAAATTGCTCGGTCAAAAGTGATGGGCTCAAAAGGGGCTTGCAAAGTATTGAATCGCCTGATTTTCAAATGGGTGAAACCATGTCGGGTGAGTCGCGTGAAATCGATGAAGAAGTGGCAAAAGAATGGGAGCATACACTTTTGCAGAATAGCATGGACAAGGAATTGCATGAACTAAATAAACGTCTAGAGCAAAAAGAGTCCGAAATGAAACTTTTTGGAGGATTTGACACAGCAGCTCTCAAGCAGCATTTTGGGAAGAAAATTGTGGAACTGGAAGATGAGAAAAGAGCTGTCCAGCAAGAGAGGGATCGCTTGTTAGCTGAAGTTGAAAACCTGGCTGCTTGTTCTGATGGCCAAACACAGAAAATGCATGACATACATTCCCAAAAACTCAAAACACTTGAGGCTCAGATTCTAGAACTCAAGAAGAAACAGGAAAACCAGGTTCAACTCCTAAAGCAAAAACAAAAAAGTGATGAAGCTGCAAAAAAATTGCAGGACGAGATTCAATTCATAAAGGCTCAGAAGGTTCAATTACAACAAAGGATGAAACAAGAGGCAGAACAATTTCGACAGTGGAAAGCATCTCGTGAGAAAGAGCTCCTTCAGCTAAGAAAGGAGGGCAGGAGAAATGAATATGAAAGGCACAAACTGCAGGCTCTAAATCAGCGGCAGAAAATGGTTCTTCAAAGAAAAACAGAGGAGGCTGCAATGGCCACCAAGAGGCTGAAAGAACTACTAGAAGCTCGGAAATCTAATGGTCGTGAAAATTCAGGCATTACAAACGGAAATGGAATGAATGGGCAGAGCAATGAGAAATCTCTACAACGTTGGCTTGACCATGAATTGGAAGTGATGGTGAATGTGCATGAAGTTCGTTTTGAATATGAAAAACAAAGCCAAGTGCGAGCTGCACTTGCAGAAGAGTTATCCATGCTGAGACAAGTGGATGAGTTTGCTTCAAAGGGCCTCAGCCCTCCAAGAGGGAAAAATGGTTTCGCTAGAGTGTCCTCTATGTCACCAACCGCAAGAATGGCCAGAATAACATCACTTGAAAACATGCTAAGCATATCCTCAAATTCCCTTGTAGCAATGGCTTCACAACTTTCAGAGGCAGAGGAACGAGAGCGTGCCTTCACCAACCGCGGACGTTGGAACCAGTTGCGCTCCATGGGAGATGCTAAGAATTTGCTTCAATACATGTTCAATTCTCTTGCAGATGCACGGTGCCAATTATGGGAAAAGGAACTAGAAACTAGGGAAATGAAAGAGCAACTGAAAGAACTTGTGGGACTGTTAAGGCAGAGTGAGACACGGAGAAAGGAGGTAGAGAAAGAGCTAAAATTGAGAGAGAAGGCTGTTGCGATTGCATTAGCTTCATCTGCACCGGTCCATCGTGAGCCCGAGAGTACACCACCATCATTGAAACACTTTGCTGATGAATTGAGTGGTCCTTTGTCTCCAATGTCAATACCAGCCCCGAAGCAACTCAAGTATACAGCAGGAATTGCCAATGGCTCTGCTAGAGTTTCTGCTGCAACCCTAGATCAAACACGAAAGATGGTACCAATAGGAAACTTATCAATGAAGAAGTTAGCAACTGTAGGACAAGCTGGAAAACTATGGAGATGGAAGAGAAGTCATCACCAATGGCTCTTACAGTTTAAATGGAAGTGGCAGAAACCATGGAGACTTTCGGAATGGATCAGACATAGTGATGAAACAATAATGAGATCAAGGCCTCGACCACATGCTCTGCCTGCTGGAATGAATTTGGGGCATCCGATGTTAAACCTGCAGAAGAATAGTGATCGAATGAAATTCTGCCTTATTGACAATCAGACATGTTGTTTGATGCACAAACCACTTGAAATTGGTGGTAAATTGCAAAAAATTTCAAACCACCCAGCTATTGCAGTTCTACTGCCGCTTTCTCTTTCTTTGGCTTTGAAGCTTCAACTTGGAGGAAAAGCAACTTTCAAGCCACCGACTATTCAGAGGAAGATGGTGCAAGCTACTAAGGGAGAAGCCACTGGCATCAATTGGCGACACCCGTTTAAAACCTTAGCTTGCTAG 3453 43.87 MEAGEDCCVKVAVHIRPLIGDERLQGCKDCVTVISGKPQVQIGSHSFTFDHVYGSTGSPSSSMFEECVSPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGGQTGIIPQVMNVLFSKIETLKDQMEFQLHVSFIEILKEEVRDLLDSTFSKVEGTNGHAGKVTLPGKPPIQIRESSNGVITLAGSTEVSVNTLKEMASCLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNPAFPGEGNIDNISEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELFARGGSSSDEIQVLKERIAWLEAANQDLCRELHEYRSRCGIVEQCETDAQVCAQDGINCSDKTDGLINCSVKSDGLKRGLQSIESPDFQMGETMSGESREIDEEVAKEWEHTLLQNSMDKELHELNKRLEQKESEMKLFGGFDTAALKQHFGKKIVELEDEKRAVQQERDRLLAEVENLAACSDGQTQKMHDIHSQKLKTLEAQILELKKKQENQVQLLKQKQKSDEAAKKLQDEIQFIKAQKVQLQQRMKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSNGRENSGITNGNGMNGQSNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELSMLRQVDEFASKGLSPPRGKNGFARVSSMSPTARMARITSLENMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGDAKNLLQYMFNSLADARCQLWEKELETREMKEQLKELVGLLRQSETRRKEVEKELKLREKAVAIALASSAPVHREPESTPPSLKHFADELSGPLSPMSIPAPKQLKYTAGIANGSARVSAATLDQTRKMVPIGNLSMKKLATVGQAGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRSRPRPHALPAGMNLGHPMLNLQKNSDRMKFCLIDNQTCCLMHKPLEIGGKLQKISNHPAIAVLLPLSLSLALKLQLGGKATFKPPTIQRKMVQATKGEATGINWRHPFKTLAC 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33736589 33747996 + CrPI670011_05g022020.1 Cre05g2202 498715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2202 1150 Coils Coil 540 567 - -
Cre05g2202 1150 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 PRINTS Kinesin heavy chain signature 215 232 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 PRINTS Kinesin heavy chain signature 259 277 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 PRINTS Kinesin heavy chain signature 313 334 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 Gene3D Kinesin motor domain 2 391 IPR036961 -
Cre05g2202 1150 Pfam Kinesin motor domain 16 363 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 Coils Coil 885 912 - -
Cre05g2202 1150 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 956 1042 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Cre05g2202 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 394 IPR027417 -
Cre05g2202 1150 SMART kinesin_4 6 371 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 Coils Coil 583 655 - -
Cre05g2202 1150 ProSitePatterns Kinesin motor domain signature. 258 269 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cre05g2202 1150 ProSiteProfiles Kinesin motor domain profile. 8 363 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre05g2202 1150 Coils Coil 507 527 - -
Cre05g2202 1150 Coils Coil 688 708 - -
Cre05g2202 1150 Coils Coil 403 423 - -
Cre05g2202 1150 CDD KISc_KIF4 7 364 - -
Cre05g2202 1150 FunFam kinesin-like protein KIN-4A isoform X1 2 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2202 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2202 Cre-Chr5:33736589 Cre10g1998 Cre-Chr10:34659250 8.80E-58 dispersed
Cre05g2202 Cre-Chr5:33736589 Cre11g1876 Cre-Chr11:30426099 3.10E-260 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38