Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2205 ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCACTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAATAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAACAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTTCACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCACAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCAGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGTCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGAGTACTCCTGGAGAAAGTACGGTCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGCCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCAGCAGCGCTTGTTCTCGAATCATCATAA 1164 48.63 MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASTTPNAIAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTSPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33756245 33757843 - CrPI670011_05g022050.1 Cre05g2205 498718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2205 387 FunFam WRKY transcription factor 65 298 375 - -
Cre05g2205 387 MobiDBLite consensus disorder prediction 107 145 - -
Cre05g2205 387 Pfam Plant zinc cluster domain 267 312 IPR018872 -
Cre05g2205 387 SUPERFAMILY WRKY DNA-binding domain 312 373 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2205 387 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 376 IPR044810 GO:0003700(InterPro)
Cre05g2205 387 MobiDBLite consensus disorder prediction 131 145 - -
Cre05g2205 387 Pfam WRKY DNA -binding domain 316 372 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2205 387 MobiDBLite consensus disorder prediction 115 130 - -
Cre05g2205 387 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2205 387 Gene3D WRKY domain 299 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g2205 387 SMART WRKY_cls 314 374 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1125 Cre-Chr2:10047212 Cre05g2205 Cre-Chr5:33756245 9.90E-67 dispersed
Cre05g2205 Cre-Chr5:33756245 Cre09g0718 Cre-Chr9:6971355 1.80E-47 dispersed
Cre05g2813 Cre-Chr5:38847898 Cre05g2205 Cre-Chr5:33756245 1.10E-59 transposed
Cre06g2248 Cre-Chr6:30409200 Cre05g2205 Cre-Chr5:33756245 7.20E-56 transposed
Cre04g1325 Cre-Chr4:32071065 Cre05g2205 Cre-Chr5:33756245 2.80E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53750 PF03106 WRKY 2.90E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2205 - - - 0.0