Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2206 ATGGGGACCTACCCATCCTCCCCGATCATCGCTCTCCTCTTCTTCCTCTTCATAGCTTTATCATCTGCGTCGCCTTCTTCCATCATCCCCCAGAGGACAGACGAGGAGGTCATGGCGCTCTACGACCAGTGGCGTGCCAAGCACGGGAAGCTGAACAACCTCTTGGGAGCAAAGCCCGACAATCGATTCCACATCTTCAAGGACAATCTCAAGTACATCGATGAAATCAACGCCCAAAATTTGCCCTACCGATTGGGTTTGAACGTCTTCGCAGATCTGACGAACGAGGAGTACCGATCTAGGTACTTGGGAGGCAAATTCGCCTCCGGTTCAAGGAGAAACAGGACGAGCAACCGCTATCAACCTCGCCTTGGAGATGAAGTCCCCGACTCTATCGATTGGAGGGAGAAAGGAGCAGTCGTTCCCATTAAAGACCAGGGAAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCCGTGGAAGGCATAAACCAGATTGTTACGGGCGACTTGATAGCATTATCTGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAATGGTGGCTTAATGGACTATGCCTTCGAGTTCATCATCAACAATGGAGGCATTGACACTGAAGAAGATTATCCTTACAACGGATTTGATAGCTCCTGTATCCAATATAAGAAAAATGCTAGGGTCGTTTCAATTGATGGTTATGAAGACGTCCCTATAAACAATGAGAAAGCACTGCAAAAAGCAGCAGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGAGGCGGTAGAAGTTTCCAGCTATATCAATCGGGTATATTCACTGGAAAGTGTGGCACAGATTTGGACCATGGTGTTAATGTGGTTGGATATGGGTCTGAAGGGGGCGTTGATTACTGGATTGTGAGAAACTCATGGGGTGCGAGCTGGGGTGAAAGTGGCTACGTCAGGATGCAACGTAATGTCGCTTCCCCAAATGGTCTTTGTGGGATTGCAATGGAGCCTTCCTACCCAATTAAAAACGGACCGAACCCACCAAATCCAGGCCCCACTCCTCCAAGTCCGGTGAAACCCCCATCTGTATGCGATGAATATTACACCTGTCCCGCCGCTGAAACTTGCTGCTGTATCTTCGAGTTCTCAAACTTGTGCCTTGAATGGGGATGCTGCCCACTTGAAAGCGCCACCTGTTGTGATGACCATTACAGCTGCTGCCCCCATGACTACCCCATCTGTAACGTCCGTGCTGGAACCTGCTTGAAGGGTAAGAATGATGTTTTCGGAGTGAAGGCGATGAGGCGCACTGCAGCTGCAGCCAGACCATCGTGGGCTCATGGAGGTGTTACTGTTGGAAAGAGCAGTGCTTAA 1380 49.64 MGTYPSSPIIALLFFLFIALSSASPSSIIPQRTDEEVMALYDQWRAKHGKLNNLLGAKPDNRFHIFKDNLKYIDEINAQNLPYRLGLNVFADLTNEEYRSRYLGGKFASGSRRNRTSNRYQPRLGDEVPDSIDWREKGAVVPIKDQGSCGSCWAFSTIAAVEGINQIVTGDLIALSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYNGFDSSCIQYKKNARVVSIDGYEDVPINNEKALQKAAAKQVVAVAIEGGGRSFQLYQSGIFTGKCGTDLDHGVNVVGYGSEGGVDYWIVRNSWGASWGESGYVRMQRNVASPNGLCGIAMEPSYPIKNGPNPPNPGPTPPSPVKPPSVCDEYYTCPAAETCCCIFEFSNLCLEWGCCPLESATCCDDHYSCCPHDYPICNVRAGTCLKGKNDVFGVKAMRRTAAAARPSWAHGGVTVGKSSA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33774803 33779160 + CrPI670011_05g022060.1 Cre05g2206 498719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2206 459 Gene3D Cysteine proteinases 24 345 - -
Cre05g2206 459 Pfam Granulin 377 424 IPR000118 -
Cre05g2206 459 SUPERFAMILY Cysteine proteinases 32 343 IPR038765 -
Cre05g2206 459 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Cre05g2206 459 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Cre05g2206 459 SMART GRAN_2 366 423 IPR000118 -
Cre05g2206 459 SMART Inhibitor_I29_2 41 98 IPR013201 -
Cre05g2206 459 FunFam Cysteine protease 1 363 426 - -
Cre05g2206 459 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre05g2206 459 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre05g2206 459 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre05g2206 459 SUPERFAMILY Granulin repeat 363 397 - -
Cre05g2206 459 CDD Peptidase_C1A 129 342 IPR039417 -
Cre05g2206 459 Gene3D Granulin 363 426 IPR037277 -
Cre05g2206 459 FunFam Cysteine protease 1 23 345 - -
Cre05g2206 459 SMART pept_c1 128 343 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre05g2206 459 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Cre05g2206 459 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre05g2206 459 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Cre05g2206 459 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 340 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2206 K25900 - - csv:101217590 825.469
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2206 Cre-Chr5:33774803 Cre11g2290 Cre-Chr11:34565168 4.40E-101 dispersed
Cre02g0979 Cre-Chr2:7179803 Cre05g2206 Cre-Chr5:33774803 4.60E-141 wgd
Cre04g1327 Cre-Chr4:32093615 Cre05g2206 Cre-Chr5:33774803 1.00E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33