Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2216 ATGGGAAGCCCTGACAATCGGGTTGCTTCCGACTCCGCCGATAACACATCCAAGAATGACTCCGAAGACGACGACGACAATGGAGTTCAGAGCCCGCCTTCCCATCCTTGTCCTTTCTCAGAAGGAGAAAAGGTCCTCGCTTTTCATAGCTTCGTCATATATGAAGCTAAGGTACTGAAAACAGAATATCAGTTGAAAGAATGGCGATGTTATGTTCATTACCTTGGATGGAGCAAAACATTAGAGGATGCCTCAATCTTGCTTGCAATAATTTCATATAATTCAATGCTGAAACTTCTTAAAGTTCGTGTAGAGATCAATGTGAATGCAGATGGTTGGGATGAGTGGGTAGGACTTGATAGATTACTGAAGTTTACTGAAGAGAATGTGAAGAAACAGCAGGAACTCAATGAGAAGAGGGGGACTGACAAGAAGGCATCTCGAGCATCCCAGACTAAGCCCAAGAATGTGATAAAAGGGAGGAAGCGAAAGAATGATGCTAGTAAGGAAAAGAGTGCCATGAATGTTGAAAAGCTTGTGAGCATACAGATTCCAGTTAAACTGAAGAAGCAGCTAGTTGATGACAGTGAGTTTGTAACACATCTTGGGAAGCTGGTAAAGCTCCCACGCACACCTAATGTAGAAGACATACTGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGTAACGAAAGATGAATCGGTTGGAGAAATCGTGAAAGGGTTGATTTGTTACTTCGATAAAGCACTACCTGCAATGCTTCTATACAAGAGCGAACGCCAACAATATGAGGAATTGATCGTCAATGATGTATCCCCTTCTTCCGTATATGGTGCCGAACACCTTCTACGGCTATTTGTTAGGTTGCCTGAGTTATTGTGTCAAGCCAATATTGAAGAGGAAACTTTGATAGAACTGCAACAGAAGTTAGTTGACTTGCTCAAGTTTTTAAGGAAGAATCAGAATGCGTTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGTACCAACAATGCCGATGACTAA 1038 41.81 MGSPDNRVASDSADNTSKNDSEDDDDNGVQSPPSHPCPFSEGEKVLAFHSFVIYEAKVLKTEYQLKEWRCYVHYLGWSKTLEDASILLAIISYNSMLKLLKVRVEINVNADGWDEWVGLDRLLKFTEENVKKQQELNEKRGTDKKASRASQTKPKNVIKGRKRKNDASKEKSAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDILKKYLEYRLKKDVTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVNDVSPSSVYGAEHLLRLFVRLPELLCQANIEEETLIELQQKLVDLLKFLRKNQNAFFLSSYHVPENMETSTNNADD 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33843285 33849261 - CrPI670011_05g022160.1 Cre05g2216 498729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2216 345 Gene3D MRG domain 172 343 IPR038217 -
Cre05g2216 345 MobiDBLite consensus disorder prediction 1 15 - -
Cre05g2216 345 MobiDBLite consensus disorder prediction 133 150 - -
Cre05g2216 345 MobiDBLite consensus disorder prediction 1 36 - -
Cre05g2216 345 MobiDBLite consensus disorder prediction 133 172 - -
Cre05g2216 345 SUPERFAMILY Chromo domain-like 36 138 IPR016197 -
Cre05g2216 345 PIRSF EAF3_MRG15 33 343 IPR008676 GO:0005634(InterPro)|GO:0006325(InterPro)|GO:0006355(InterPro)
Cre05g2216 345 Gene3D - 23 152 - -
Cre05g2216 345 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 37 336 IPR008676 GO:0000123(PANTHER)|GO:0005634(InterPro)|GO:0006325(InterPro)|GO:0006355(InterPro)|GO:0016573(PANTHER)
Cre05g2216 345 Pfam MRG 162 330 IPR026541 -
Cre05g2216 345 FunFam Chromatin modification-related protein EAF3 176 339 - -
Cre05g2216 345 ProSiteProfiles MRG domain profile. 176 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2216 K11339 - - csv:101219247 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1335 Cre-Chr4:32179612 Cre05g2216 Cre-Chr5:33843285 2.50E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69