Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2222 ATGATTGGGAATTTGGGATCCTCCGAAAACAAAGAAACGCTGGCGTTTCAGTTTAAAACCCGGGAAATCCCAGGTCGCACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATGCTGCCGGCACAAGTGCTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCCGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCTAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGTGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1221 42.18 MIGNLGSSENKETLAFQFKTREIPGRTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDAAGTSAAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33883535 33886067 - CrPI670011_05g022220.1 Cre05g2222 498735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2222 406 Gene3D - 139 389 - -
Cre05g2222 406 SMART cyclin_7 177 261 IPR013763 -
Cre05g2222 406 SMART cyclin_7 274 362 IPR013763 -
Cre05g2222 406 FunFam Mitotic cyclin 6 155 255 - -
Cre05g2222 406 Pfam Cyclin, C-terminal domain 270 392 IPR004367 -
Cre05g2222 406 CDD CYCLIN_AtCycA-like_rpt2 270 384 - -
Cre05g2222 406 SUPERFAMILY Cyclin-like 270 395 IPR036915 -
Cre05g2222 406 ProSitePatterns Cyclins signature. 172 203 IPR048258 -
Cre05g2222 406 Gene3D - 153 268 - -
Cre05g2222 406 SMART Cyclin_C_2 270 393 IPR004367 -
Cre05g2222 406 PIRSF Cyclin_A_B_D_E 5 397 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre05g2222 406 MobiDBLite consensus disorder prediction 74 128 - -
Cre05g2222 406 SUPERFAMILY Cyclin-like 128 267 IPR036915 -
Cre05g2222 406 FunFam Cyclin A1 257 389 - -
Cre05g2222 406 PANTHER CYCLINS 123 381 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre05g2222 406 MobiDBLite consensus disorder prediction 40 61 - -
Cre05g2222 406 Pfam Cyclin, N-terminal domain 139 267 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2222 Cre-Chr5:33883535 Cre09g0228 Cre-Chr9:2391492 4.20E-79 dispersed
Cre01g0205 Cre-Chr1:1430262 Cre05g2222 Cre-Chr5:33883535 1.40E-42 transposed
Cre08g0548 Cre-Chr8:18186605 Cre05g2222 Cre-Chr5:33883535 2.00E-83 transposed
Cre02g1013 Cre-Chr2:7741902 Cre05g2222 Cre-Chr5:33883535 5.90E-85 wgd
Cre05g2222 Cre-Chr5:33883535 Cre08g1567 Cre-Chr8:28289464 2.80E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2222 K06627 - csv:101207493 664.84