Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2223 ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAACTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATCCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGGCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGCCTCTGCTTTTTCCGGCGAGCTCTGACCATTTAGGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTTCGCAGATTGAGGCCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGATCGGCTCACTCGCGACGTGAGGATGGCACGACAGCGTCGTCTTCCAATCTTATTCCCGAAGAAAATACGATCACTGAAAAATTCATCGACATTTCACAGCGGAGTGCCCTCTATCCCACCAATCCCTAG 579 50.26 MGSCEAAVVAMSMAKSESQFPDLRKQLRAFESDSSEIITLCEAEYVEKILEELVHKQLFLLQKQCNPSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATPLLFPASSDHLGATFLPNLSPQATRSQIEAVLSSLNENRVIGSAHSRREDGTTASSSNLIPEENTITEKFIDISQRSALYPTNP 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33887321 33888452 - CrPI670011_05g022230.1 Cre05g2223 498736

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2223 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g693 . Blo12g00976 Bda01g00581 Bda03g00194 Bpe02g00444 Bpe04g00165 Bma04g00147 Bma01g02257 Cmo05g00159 Cmo12g00518 Cma01g01803 Cma09g00270 Car01g01408 Car12g00532 Sed10g1978 Cpe06g00185 Cpe07g00503 Bhi04g00390 Tan02g0995 Cmetu01g1482 . Hepe08g1310 . Lcy13g2114 Cla08g01600 Cam08g2100 Cec08g1681 Cco08g1812 Clacu08g1785 . Cre08g1567 . . Cone17ag0869 Cone20ag0217 Lsi04g01508 Csa04g02456 . Cme03g02080 . . . Bda01g01560 . Bpe05g00036 . Bma05g00047 . Cmo01g01859 Cmo09g00266 Cma12g00577 Cma05g00158 Car05g00137 Car09g00224 Cpe11g00133 Cpe02g00206 Bhi09g03262 . . . Hepe01g1808 . . Cla05g02086 Cam05g2238 Cec05g2258 Cco05g2298 Clacu05g2234 Cmu05g2098 Cre05g2223 Lsi08g01505 Csa02g01916 Chy07g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016924 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 5