Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g2235 | ATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGCCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCGCTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTATAGGCAGAGCGAAGAATCATCCACTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA | 612 | 51.96 | MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLAIGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 33959300 | 33960009 | - | CrPI670011_05g022350.1 | Cre05g2235 | 498748 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g2235 | 203 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
| Cre05g2235 | 203 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 121 | - | GO:0010468(PANTHER) | |
| Cre05g2235 | 203 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
| Cre05g2235 | 203 | MobiDBLite | consensus disorder prediction | 169 | 188 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1366 | Cre-Chr4:32499448 | Cre05g2235 | Cre-Chr5:33959300 | 4.70E-51 | dispersed | |
| Cre05g2235 | Cre-Chr5:33959300 | Cre05g2445 | Cre-Chr5:35851156 | 9.80E-37 | dispersed | |
| Cre05g2235 | Cre-Chr5:33959300 | Cre06g2350 | Cre-Chr6:31443051 | 3.40E-37 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53752 | PF03195 | LOB | 9.40E-24 | No_clan | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g2235 | - | - | - | 0.0 |