Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2235 ATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGCCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCGCTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTATAGGCAGAGCGAAGAATCATCCACTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 612 51.96 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLAIGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV 203
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 33959300 33960009 - CrPI670011_05g022350.1 Cre05g2235 498748
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2235 203 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cre05g2235 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 121 - GO:0010468(PANTHER)
Cre05g2235 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cre05g2235 203 MobiDBLite consensus disorder prediction 169 188 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1366 Cre-Chr4:32499448 Cre05g2235 Cre-Chr5:33959300 4.70E-51 dispersed
Cre05g2235 Cre-Chr5:33959300 Cre05g2445 Cre-Chr5:35851156 9.80E-37 dispersed
Cre05g2235 Cre-Chr5:33959300 Cre06g2350 Cre-Chr6:31443051 3.40E-37 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53752 PF03195 LOB 9.40E-24 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2235 - - - 0.0