Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2236 ATGGCTCTTGAAGCTCTGAATTCTCCAACAACTCCATCACCGGCGCTTCACTACGACGACCCAAGCCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACTAAGCGTCCACGTGGTTTCGACAACCCTCCTACAGAGGAAGAGTACTTAGCGCTATGTCTTATCATGCTTGCTCGCGGTGGCGCCACCGCTACTACTGCCGACTCTGACAACCGACTTGAATATGAAGTTCCGATTCCGGCTCAACCCATATCGGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGTAATAAGGCTTTTTCATCTTACCAAGCTTTGGGCGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCATTCCACTTCCTCCACCACAACTACTTCCGCCACCGCCACCGCCACCGCCTCCGTCGGTGGAGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTCCCCACCGGTCAAGCCTTAGGCGGCCACAAACGTTGCCACTACGACGGCGGACTCGGTAACAACAACAACAACAGCAACAATCACATACAGAGTCACAACAACGCCGCCGCCCCCGCCGCTGTGACATCTTCGGAAGGGGTTGGGTCCACCCACACACAGAGTCACAGCCACCGCGACTTTGACCTGAACCTCCCAGCCTTGCCGGAGCTTTCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTATATTAACAATTCCCAAAATCGAAATTTCTCAAAATTAA 786 52.04 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATATTADSDNRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTSATATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGLGNNNNNSNNHIQSHNNAAAPAAVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRILTIPKIEISQN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33972949 33973734 - CrPI670011_05g022360.1 Cre05g2236 498749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2236 261 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Cre05g2236 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Cre05g2236 261 Pfam C2H2-type zinc finger 147 171 IPR013087 -
Cre05g2236 261 Pfam C2H2-type zinc finger 92 117 IPR013087 -
Cre05g2236 261 Gene3D Classic Zinc Finger 90 169 - -
Cre05g2236 261 MobiDBLite consensus disorder prediction 1 44 - -
Cre05g2236 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 225 IPR044653 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre05g2236 261 MobiDBLite consensus disorder prediction 114 143 - -
Cre05g2236 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Cre05g2236 261 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Cre05g2236 261 MobiDBLite consensus disorder prediction 122 143 - -
Cre05g2236 261 MobiDBLite consensus disorder prediction 1 18 - -
Cre05g2236 261 SUPERFAMILY beta-beta-alpha zinc fingers 92 169 IPR036236 -
Cre05g2236 261 SMART c2h2final6 147 169 IPR013087 -
Cre05g2236 261 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2236 Cre-Chr5:33972949 Cre05g2311 Cre-Chr5:34685684 1.10E-11 dispersed
Cre09g1286 Cre-Chr9:18437594 Cre05g2236 Cre-Chr5:33972949 4.60E-08 transposed
Cre02g1028 Cre-Chr2:7962640 Cre05g2236 Cre-Chr5:33972949 1.30E-46 wgd
Cre05g2236 Cre-Chr5:33972949 Cre08g1584 Cre-Chr8:28377340 4.90E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53753 PF13912 zf-C2H2_6 1.60E-12 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2236 - - - 0.0