Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2237 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATTGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCAACATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAGATAAATTTCTTGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTACTTCAAATAATGTGCAGAAAAGTAGGAAAGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTAGTACTCGGCGGCGCAAATGTGAAGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATTTGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGCTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1020 41.27 MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHQHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSEDKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRTSNNVQKSRKGRESSGKSNSSSKEKVMSSSTRRRKCEEEEEQENGGSCDLNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33985444 33987248 + CrPI670011_05g022370.1 Cre05g2237 498750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2237 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983(InterPro)
Cre05g2237 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 327 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre05g2237 339 CDD bHLH_AtIND_like 256 318 - -
Cre05g2237 339 MobiDBLite consensus disorder prediction 194 208 - -
Cre05g2237 339 MobiDBLite consensus disorder prediction 153 267 - -
Cre05g2237 339 Pfam Helix-loop-helix DNA-binding domain 265 305 IPR011598 GO:0046983(InterPro)
Cre05g2237 339 MobiDBLite consensus disorder prediction 213 239 - -
Cre05g2237 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 321 IPR036638 GO:0046983(InterPro)
Cre05g2237 339 Gene3D - 257 313 IPR036638 GO:0046983(InterPro)
Cre05g2237 339 SMART finulus 261 310 IPR011598 GO:0046983(InterPro)
Cre05g2237 339 FunFam Basic helix-loop-helix transcription factor 256 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2237 Cre-Chr5:33985444 Cre10g1196 Cre-Chr10:24562922 1.70E-38 dispersed
Cre03g1159 Cre-Chr3:11919237 Cre05g2237 Cre-Chr5:33985444 1.70E-18 transposed
Cre02g1031 Cre-Chr2:8027448 Cre05g2237 Cre-Chr5:33985444 8.90E-37 wgd
Cre05g2237 Cre-Chr5:33985444 Cre08g1586 Cre-Chr8:28404131 2.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53754 PF00010 HLH 1.00E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2237 - - - 0.0