Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2251 ATGATCCTCCTCCGCCTCTCTGTTTTCGCTGTTGTTCTTTTTCAGATATCCTCCGCCGTGGGCGCCGGCACAAGGTCTTACTGGACGGTGAAGTATTTGCCGGGATTGTCGGGGCCTCTTCCTTTCGAGCTGGAAACAGGATACGTAGGAGTGGGAAATTCGGAGGAATTTCAGCTGTTTTATTATTTTATCAAATCTTATGGAAATCCCAAAACGGATCCTCTGATTTTGTGGCTCACTGGAGGCCCCCGTTGCTCTACTCTCTCTGGAATTGCCTTTGAAAGTGGTCCAATAAATTTTGATGGAGAACCTAAAAATGGGAGCATTCCTCAAATAATCTTGAACCCTTACTCATGGACCAAGAAATCCAGTATAATATATATAGACTTACCAGTTGGCACGGGTTTTTCATATGCTAAAACTTCAAAAGATCATAAATCAGGAGATTATGAACAAGTTCACCATTCCCTTCAATTTTTGAGAAAGTGGTTGGTCAATCATCCAGAATTTATATCAAATCCATTCTATATTGCTGGAGATTCTTACGCTGGTATGATTGTTCCAGTTGTTGTTAAAGAAATTTTAGAAGGAAATGATAAACATATTTTTCCATTAATAAATTTTCAGGGATACATATTGGGAAATCCTATCACTACTCCTCATTCAAATAAAAATTTTGAAATCCCATTTGCTCATAACATGGCCCTCATCTCGGATGAATTGTTTGAGTCGTTGAAAACTAGTTGTCAAGGAGAATACGTGAACATAGATCCAAACAATGTGGAGTGCTTAAAATATCATGATATGTTTAAAAAGTGTACTTCTACCGTTCTAGATGGATGTATTTTATGGCCCAAGTGTTCATCTTTGAAAGAACCAGATGTGTCTGAACCAAATATGTTTGGTACTCATAGATCTCTCTACAGCGTTCCTGTTGATCGTAAATGTCGTGTGTATGACTACCTTCTTGCTTATTATTGGGCTAACAATGACCAAGTTCGAAAAGCACTTCATATACATGAGGGAAGCATTGGAGAATGGATTAGATGTCGTGACAAATATCATTACAATGTTGAGCTTGATAGTGTTTTTCCTTATCACGTGAACCTTAGTTCAAAAGGTTATCGATCACTAGTCTATAGCGGAGACCATGATATGATAGTATCGCATATGGACACTCAAGCATGGATCAAATCTCTAAATTATTCTATAGTAGATGATTGGAGGCCATGGTACATCGAGGATGAAGTTGCCGGGGTGGAGGACATACAGCAGAATATAAGCGTAAAGAATGCAGCATATTATTTAATAGATGGATAG 1320 38.41 MILLRLSVFAVVLFQISSAVGAGTRSYWTVKYLPGLSGPLPFELETGYVGVGNSEEFQLFYYFIKSYGNPKTDPLILWLTGGPRCSTLSGIAFESGPINFDGEPKNGSIPQIILNPYSWTKKSSIIYIDLPVGTGFSYAKTSKDHKSGDYEQVHHSLQFLRKWLVNHPEFISNPFYIAGDSYAGMIVPVVVKEILEGNDKHIFPLINFQGYILGNPITTPHSNKNFEIPFAHNMALISDELFESLKTSCQGEYVNIDPNNVECLKYHDMFKKCTSTVLDGCILWPKCSSLKEPDVSEPNMFGTHRSLYSVPVDRKCRVYDYLLAYYWANNDQVRKALHIHEGSIGEWIRCRDKYHYNVELDSVFPYHVNLSSKGYRSLVYSGDHDMIVSHMDTQAWIKSLNYSIVDDWRPWYIEDEVAGVEDIQQNISVKNAAYYLIDG 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34088894 34094146 - CrPI670011_05g022510.1 Cre05g2251 498764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2251 439 FunFam Serine carboxypeptidase-like 19 24 293 - -
Cre05g2251 439 Gene3D alpha/beta hydrolase 36 437 IPR029058 -
Cre05g2251 439 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 419 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cre05g2251 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2251 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2251 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2251 439 Pfam Serine carboxypeptidase 34 424 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2251 439 SUPERFAMILY alpha/beta-Hydrolases 30 426 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2251 K16296 - - csv:101207623 654.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2251 Cre-Chr5:34088894 Cre05g2830 Cre-Chr5:38969982 3.90E-163 dispersed
Cre05g2250 Cre-Chr5:34081409 Cre05g2251 Cre-Chr5:34088894 3.40E-167 tandem
Cre05g2251 Cre-Chr5:34088894 Cre05g2252 Cre-Chr5:34097919 1.70E-147 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g627 . . . Bda03g00167 Bpe02g00457 Bpe04g00152 . . . . Cma01g01777 Cma09g00299 . . . Cpe06g00210 . . . . . . . . . . . . . . . . . . . Lsi04g01471 Csa04g02491 . . . . . . . . . . . Cmo01g01835 Cmo09g00292 . . . . . Cpe02g00229 Bhi09g03215 . . . Hepe01g1839 . . Cla05g02115 Cam05g2268 Cec05g2289 Cco05g2331 Clacu05g2265 Cmu05g2128 Cre05g2251 . . Chy07g00201 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000253 3 8 1 3 3 5 0 5 5 2 3 6 2 7 6 4 6 13 2 6 4 6 3 7 8 9 2 5 4 14 152