Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2252 ATGCCTACCGCCGTCTTCCGCGTCTCTTTTCTGTTCGTCTCTGTTTTTCAAATCATCTCCGCCGCAGGGTCGTCGCGCTGGACGGTGGAGTATCTGCCGGGATTTGCAGGCCGTCTCCCATTCGAACTGGAAACAGGATATGTGGGTGTTGGGGATTTGGAGGAAGTGCAATTGTTTTATTATTTTGTGAAATCGGAAGGAAATCCAAAGACGGATCCTCTGCTTTTTTGGCTCACCGGAGGCCCCGGTTGCTCTGCTTTAACTGCACTTGCCTTTGAAGTTGGTCCCATAAATTTTAAGATTGAGCGATACAATGGGAGCTTACCTAAAATAATCTTGAACCCTTATTCGTGGACGAAGAAATCCAGTATAATAATGGTAGATTTGCCAGTGGGAACAGGGTTTTCATATGGTAAAACTCCACAATCTCTTAAGACTGGAGATTTTAATCAAGTTCATCATTCTATTCAATTTTTTAAAAAGTGGTTAACTCATCATCCGGAATTTATATCTAATCCATTTTATGTGGGTGGAGATTCATACTCGGGTATTATCATTCCGGTTATTGCTCAAGAAATTTTGGAAGAAAATAAGTATGCTCCCTATGTAAATCTTCAGGGATACATATTGGGAAACCCAGTCACCATTCGTGACACGTATCAAAATTTTGCAATTTCTTTTGCTCATAGAATGACTCTTATCTCTGATGAGTTATTTGAGTCATTGACCTCTAGTTGCAAGGGAGAATATATAAATATTGATCCGAGCAATGTGGATTGTTTAAGACATTATAATACGTACCAAAAGTGTGTTTCAAAGATAGAAAAGTCAAGTATTTTGTTGCCAAAATGTTCGTTTCATTCTCCAAAGAAACAAAAAGATGCATTTGATCGAAGATCTCTTTACAATACCCCCAAAGTGCTTCTTGATCCCGAGCCAGCACTTCCTTCTCTTGATTGTCCTGGAAGCATTGGAGAATGGACAAGATGTAGGGATCGGCAAAATTACAACTTTGATGTTGAGAGTGCTTTTCCTTATCATGTGAACCTTAGTTCGAAAGGTTACAAGTCTTTGATTTATAGTGGGGATCATGATATGATTGTATCGCATTTGGACACTCAAGCATGGATTAAATCTTTAAATTATTCTATTGTTGAGGATTGGAGACCTTGGTTTATTGCAGATCAAGTAGCTGGATATACAAGAAGCTATGCAAATAAGATGACATTTGCCACTATAAAAGGTGGAGGGCACACAGCAGAATATACACAAAAAGAATGCAGTGCAGTATTTAGTAGATGGATAACTGGAGAACCCTTATAA 1323 39.0 MPTAVFRVSFLFVSVFQIISAAGSSRWTVEYLPGFAGRLPFELETGYVGVGDLEEVQLFYYFVKSEGNPKTDPLLFWLTGGPGCSALTALAFEVGPINFKIERYNGSLPKIILNPYSWTKKSSIIMVDLPVGTGFSYGKTPQSLKTGDFNQVHHSIQFFKKWLTHHPEFISNPFYVGGDSYSGIIIPVIAQEILEENKYAPYVNLQGYILGNPVTIRDTYQNFAISFAHRMTLISDELFESLTSSCKGEYINIDPSNVDCLRHYNTYQKCVSKIEKSSILLPKCSFHSPKKQKDAFDRRSLYNTPKVLLDPEPALPSLDCPGSIGEWTRCRDRQNYNFDVESAFPYHVNLSSKGYKSLIYSGDHDMIVSHLDTQAWIKSLNYSIVEDWRPWFIADQVAGYTRSYANKMTFATIKGGGHTAEYTQKECSAVFSRWITGEPL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34097919 34101473 - CrPI670011_05g022520.1 Cre05g2252 498765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2252 440 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 434 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cre05g2252 440 Gene3D alpha/beta hydrolase 24 295 IPR029058 -
Cre05g2252 440 Gene3D - 314 440 - -
Cre05g2252 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 408 421 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2252 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2252 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2252 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2252 440 Pfam Serine carboxypeptidase 33 437 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cre05g2252 440 SUPERFAMILY alpha/beta-Hydrolases 29 439 IPR029058 -
Cre05g2252 440 FunFam Serine carboxypeptidase-like 19 22 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2250 Cre-Chr5:34081409 Cre05g2252 Cre-Chr5:34097919 9.30E-165 dispersed
Cre05g2252 Cre-Chr5:34097919 Cre05g2830 Cre-Chr5:38969982 3.50E-180 dispersed
Cre05g2251 Cre-Chr5:34088894 Cre05g2252 Cre-Chr5:34097919 1.70E-147 tandem
Cre05g2252 Cre-Chr5:34097919 Cre05g2253 Cre-Chr5:34108120 1.60E-28 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2252 K16296 - csv:101210918 548.125