Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2260 ATGGGCGTTGTTTGTTGGCTTCTGGGGGAAGTGGTTTGGAACTTTGGATGCATTGAAGTGAAGGATTTATGTTGCTTTTCTGCTACTTTCTGCTGGTTTCTTCTCTTAATCTGTGATGTCTTTTGCTGGATGACGAGTACTTTAATGGCAGGAATGTTTAATGGGGAGGGATCCTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCCGGTATAGGGTCACCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGGTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAATCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTGGAGCAAATTTCCCACCTTGCTTCACCCGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACCGAGGCACTCGCTGACCGGATACTCAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAAGAGGTGTTGGAACAAATGGCTCTTCGGCTTACTGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGTGAAGCACTTGCAGTTAGCTCCGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCACCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTGGTAGTCCTGATTCGGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCGCTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCATTAAACTTCTATGCCGCATTGTTTGATTGCTTAGAGTCAACCGTGTCGAGATCATCGATCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTGGAGAGGACAGAGAGGCACGAAAAGCTCGAGAGATGGATACTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTATCATACCGCACACCGATCACATCTCTTATTTTTCCCCTCTGCCGTTGCCGACGCTGATCGCCGCCACGCCTCCACCGCCATTTTTCTTTCTCACTGTCTGCTGCAGGCTCACGCCGCCACCACTCCAACCCCGTTTTCCCTCTCTCCTGAGGTGCCCCGTTTCTACACCAATCTCAATCTAACCTACTCGCCGTCCGCCCCATCTCTCAGTGATCAGTATCTGCACGCACGGCCTGCGTTTCTTCCAACACATTCATCTCCTTCTCTCTCGATGGAGGGTTCCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTACAGACAAAATCGGCCGTCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGACAGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAGCAACTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGCGATGGTTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCCTTCCTGATGACTTGAAAGAGAAGCTAGCAGGAACTGAAGAGAACCGAAGAAAATTTCAAAGCTTGTATGAATCTGTGAACTCTCTTTCGACAGTAGATGCGCTTAGGCTATTCAATGATGATATTACGGCACAGCGCACAAAAGAAGAGCGTGTAAATGAAAATACAAATTCCCAAACAAAGGATTTGTCAAAGCAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTCTACCCAAATCACCTGCTCTGAATCTTCATTTACATGAAGAACAGTAG 2334 44.99 MGVVCWLLGEVVWNFGCIEVKDLCCFSATFCWFLLLICDVFCWMTSTLMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFGSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHTAHRSHLLFFPSAVADADRRHASTAIFLSHCLLQAHAATTPTPFSLSPEVPRFYTNLNLTYSPSAPSLSDQYLHARPAFLPTHSSPSLSMEGSIAEELYSESLQSTKSKLGDLSLSDYRQNRPSGSGVDDSCEDDRSLWGGSDEGLEEATDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASLPDDLKEKLAGTEENRRKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNENTNSQTKDLSKQNSDYGRLRKFYGELEALLPKSPALNLHLHEEQ 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34164253 34171907 - CrPI670011_05g022600.1 Cre05g2260 498773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2260 777 MobiDBLite consensus disorder prediction 727 746 - -
Cre05g2260 777 Pfam GRAS domain family 96 477 IPR005202 -
Cre05g2260 777 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 476 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre05g2260 777 MobiDBLite consensus disorder prediction 584 619 - -
Cre05g2260 777 Pfam Essential protein Yae1, N terminal 636 673 IPR019191 -
Cre05g2260 777 ProSiteProfiles GRAS family profile. 87 511 IPR005202 -
Cre05g2260 777 MobiDBLite consensus disorder prediction 597 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1575 Cre-Chr3:31258027 Cre05g2260 Cre-Chr5:34164253 4.60E-146 dispersed
Cre05g2260 Cre-Chr5:34164253 Cre11g1204 Cre-Chr11:9983798 1.80E-54 dispersed
Cre05g2260 Cre-Chr5:34164253 Cre03g0450 Cre-Chr3:2911442 6.80E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53757 PF03514 GRAS 1.60E-118 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2260 - - - 0.0