Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2278 ATGGCCAAAGACGACGCCACCGCCTCGCGACGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCTGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTTGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTATCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTCGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCCGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCGTTTGA 864 56.71 MAKDDATASRRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34358408 34363415 - CrPI670011_05g022780.1 Cre05g2278 498791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2278 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 FunFam Probable aquaporin PIP1-2 23 285 - -
Cre05g2278 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cre05g2278 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cre05g2278 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cre05g2278 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cre05g2278 287 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g2278 287 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0759 Cre-Chr2:4443352 Cre05g2278 Cre-Chr5:34358408 3.60E-122 dispersed
Cre04g0991 Cre-Chr4:28486743 Cre05g2278 Cre-Chr5:34358408 6.00E-133 dispersed
Cre04g0992 Cre-Chr4:28495913 Cre05g2278 Cre-Chr5:34358408 4.60E-133 dispersed
Cre04g1037 Cre-Chr4:28958360 Cre05g2278 Cre-Chr5:34358408 2.70E-28 dispersed
Cre05g2278 Cre-Chr5:34358408 Cre07g0756 Cre-Chr7:5736009 2.30E-108 dispersed
Cre10g2147 Cre-Chr10:36030815 Cre05g2278 Cre-Chr5:34358408 1.00E-116 wgd
Cre05g2278 Cre-Chr5:34358408 Cre08g0699 Cre-Chr8:19992402 4.30E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2278 K09872 - csv:101204956 554.288