Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2297 ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGGGAGATTTCAGGGCTTCCCGAGTATCACGGCATCTGTAAGAAGATGTATGGGGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGAGAACAGACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGATCCTGCAATATTGAAGAGAATTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAGAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCCGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGCAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGTTACTAGCGAAGAGGAATTCGGACAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCTGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGACTCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACCGGTTCTCCACGGAACCGGGAGAACGCTGCTGCCGTGTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTAGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA 1893 44.32 MGSSEKELKDIMVNQLPESVREISGLPEYHGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEERATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGNNVSDCDRAAIDALLAKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDSGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34538688 34541330 + CrPI670011_05g022970.1 Cre05g2297 498810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2297 630 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 CDD RING-Ubox_PUB 250 302 IPR045210 -
Cre05g2297 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Cre05g2297 630 Pfam U-box domain 249 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2297 630 SUPERFAMILY RING/U-box 247 323 - -
Cre05g2297 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 Gene3D - 333 620 IPR011989 -
Cre05g2297 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Cre05g2297 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515(InterPro)
Cre05g2297 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2297 630 SMART Ubox_2 252 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2297 630 Gene3D - 12 122 IPR036537 GO:0007166(InterPro)
Cre05g2297 630 PANTHER U BOX DOMAIN-CONTAINING 34 622 - -
Cre05g2297 630 FunFam RING-type E3 ubiquitin transferase 249 322 - -
Cre05g2297 630 FunFam RING-type E3 ubiquitin transferase 332 625 - -
Cre05g2297 630 FunFam RING-type E3 ubiquitin transferase 9 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0473 Cre-Chr3:3130810 Cre05g2297 Cre-Chr5:34538688 2.50E-116 dispersed
Cre03g0979 Cre-Chr3:8648408 Cre05g2297 Cre-Chr5:34538688 5.30E-45 dispersed
Cre04g1347 Cre-Chr4:32299880 Cre05g2297 Cre-Chr5:34538688 6.50E-19 dispersed
Cre04g1348 Cre-Chr4:32306183 Cre05g2297 Cre-Chr5:34538688 4.80E-11 dispersed
Cre04g1763 Cre-Chr4:35622220 Cre05g2297 Cre-Chr5:34538688 7.00E-14 dispersed
Cre05g2297 Cre-Chr5:34538688 Cre07g1008 Cre-Chr7:12813482 9.20E-09 dispersed
Cre05g2297 Cre-Chr5:34538688 Cre02g2329 Cre-Chr2:36774721 3.30E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2297 K27628 - csv:101221065 1103.97