Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2306 ATGGTGGCCGGCAGATCAGGAATCTCTGGGTGCTCCAACATAAGGAGCATAGTCGTCCACGTCATCATCGGAAGGTGGTTCGTGGTGTTCGCTTCGCTCTTAATCATGGCGGCTGCCGGAGCAACGTACATGTTTGGCCTATATTCGAACGACATAAAATCTGTTTTGGGTTATGACCAAACAACGTTAAATTTGCTGAGTTTTTTCAAAGATTTGGGTGCAAACGTCGGCGTTTTGTCTGGACTTATTAACGAGGTTACGCCGCCATGGGTGGTTTTGTCCATCGGCGCTGTTTTGAATTTTTTTGGTTACTTCATGATTTGGCTGGCTGTTACTAAGCGGATCTCTACCCCCAAAGTTTGGCAAATGTGTCTCTATATTTGTATTGGAGCCAATTCTCAATCTTTTGCTAATACGGGTTCTCTTGTTACCTGTGTCAAAACCTTTCCTGAGAGTCGTGGCGTAGTTCTCGGTATCTTGAAGGGATACGTCGGACTGAGCGGCGCCATAATCACACAACTCTTCCATGCATTTTACGGCAACGACACCAAATCCTTAATTCTCCTCATCGGATGGCTCCCGGCGGCAATTTCCTTCGCATTTTTACGAACAATTCGTATTATGAAAGTTATCCGACAGCCAAACGAGCTTAAAGTCTTCTACAATTTCCTTTACATTTCTCTTGGCCTCGCCGGATTCCTAATGCTAATGATCATCGTAGAGAGCAAAACAGAGTTCACTCAAAGCGAATACGGTGGCAGCGCCGCTGTCGTCCTTCTCCTCCTCTTCCTCCCACTCGCCGTCGTCATCATTGAAGAATACAATCTCTGGAAACTCAAAACCGTCCTCATTAAATCCCCAAATCCCTCTGTTCAAATCGTAACAGAGAAACTCCCAAAAACCGAGCAACTCCATAAGACAGAGCATCCAAAACAACAACAAAAAGAACCATCTTGTTGGACAACAATTTTCAACCCACCAGCGCGCGGCGAGGATTTCACAATTCTCCAAGCTCTCTTCAGTGTCGACATGCTGATTCTATTCCTCTCTGCAATTTGCGGCGTCGGCGGAACATTAACGGCAATAGACAATTTGGGTCAAATCGGAATGTCTTTGGGGTACCCAAAAAGAAGCATTAGCACATTTGTAACATTAGTCAGCATTTGGAATTACCTCGGCCGAGTTGCCTCTGGTTTCATCTCAGAAATAGTTTTGACAAAATACAAATTCCCTCGTCCTCTAATGCTCTCTCTGACCCTTCTTTTTTCCTGCATTGGCCATTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTGGCTTCCATCGTAATTGGATTCTGCTTTGGAGCACAGTGGCCATTGATTTTCGCCATAATTTCAGAGCTTTTTGGGTTGAAATATTACTCCACACTATACAATTTTGGGGCAGTGGCAAGCCCAGTTGGGCTTTATGTTCTGAATGTGAAAGTGGCTGGGAATTTCTACGACAGAGAAGCAGAGAAGCAACTGAGAGCAAAAGGGATGATCAGAAAAGCAGGGGAAGAATTAAAGTGCTTTGGAGGGGAATGCTTCAAGCTTTCATTCATTGTAATTACTGCAGTTACTTTGTTGGAAGTTCCGAGATGA 1629 44.57 MVAGRSGISGCSNIRSIVVHVIIGRWFVVFASLLIMAAAGATYMFGLYSNDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTKRISTPKVWQMCLYICIGANSQSFANTGSLVTCVKTFPESRGVVLGILKGYVGLSGAIITQLFHAFYGNDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMLMIIVESKTEFTQSEYGGSAAVVLLLLFLPLAVVIIEEYNLWKLKTVLIKSPNPSVQIVTEKLPKTEQLHKTEHPKQQQKEPSCWTTIFNPPARGEDFTILQALFSVDMLILFLSAICGVGGTLTAIDNLGQIGMSLGYPKRSISTFVTLVSIWNYLGRVASGFISEIVLTKYKFPRPLMLSLTLLFSCIGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGAVASPVGLYVLNVKVAGNFYDREAEKQLRAKGMIRKAGEELKCFGGECFKLSFIVITAVTLLEVPR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34613215 34615405 + CrPI670011_05g023060.1 Cre05g2306 498819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2306 542 CDD MFS_Mch1p_like 24 540 - -
Cre05g2306 542 Gene3D MFS general substrate transporter like domains 333 538 IPR036259 -
Cre05g2306 542 Pfam Nodulin-like 25 270 IPR010658 -
Cre05g2306 542 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 25 538 - GO:0016020(PANTHER)
Cre05g2306 542 SUPERFAMILY MFS general substrate transporter 25 486 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2306 Cre-Chr5:34613215 Cre05g2308 Cre-Chr5:34634909 1.20E-195 dispersed
Cre05g2306 Cre-Chr5:34613215 Cre05g2307 Cre-Chr5:34624692 6.00E-283 tandem
Cre10g2113 Cre-Chr10:35730619 Cre05g2306 Cre-Chr5:34613215 1.10E-192 wgd
Cre05g2306 Cre-Chr5:34613215 Cre08g0732 Cre-Chr8:20379496 7.30E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2306 - - - 0.0