Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2309 ATGGGCTGCGGCTGCGCCGCCCTTTCCAATTCAGCCGGCGGCTCCGGCATCCACCACTCACGAGCCCCATTTGAAAACAGAGAAAAGATATCACAGAACAAAGCTGTCAGAAACATCCTCAAGTTCCTCATTGTACCTTTGAGGATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAATCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGCGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGGCATAGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGACCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTTGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGGAAACGACCTATTGGGCCTTCGTGGGCTTTTTTTGCTGGACAGAGACTGAAAGAAATATTTGGGCTTTTGCTTTGTGGACCTCTTGCAAGATTCAGTTTCTGA 1665 49.79 MGCGCAALSNSAGGSGIHHSRAPFENREKISQNKAVRNILKFLIVPLRMFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRKRPIGPSWAFFAGQRLKEIFGLLLCGPLARFSF 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34642720 34655121 - CrPI670011_05g023090.1 Cre05g2309 498822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2309 554 Gene3D - 118 460 IPR012334 -
Cre05g2309 554 FunFam Pectate lyase 118 460 - -
Cre05g2309 554 SUPERFAMILY Pectin lyase-like 109 438 IPR011050 -
Cre05g2309 554 SMART amb_all 193 390 IPR002022 -
Cre05g2309 554 Pfam Pectate lyase 201 382 IPR002022 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 265 286 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 165 190 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 367 386 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 409 433 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 141 158 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 438 461 IPR018082 -
Cre05g2309 554 PRINTS Pollen allergen Amb family signature 201 217 IPR018082 -
Cre05g2309 554 PANTHER PECTATE LYASE 18-RELATED 64 461 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1031 Cre-Chr4:28914331 Cre05g2309 Cre-Chr5:34642720 1.50E-181 dispersed
Cre05g0447 Cre-Chr5:4069326 Cre05g2309 Cre-Chr5:34642720 1.70E-153 dispersed
Cre05g2309 Cre-Chr5:34642720 Cre06g1543 Cre-Chr6:10356445 4.10E-154 dispersed
Cre04g0948 Cre-Chr4:28137859 Cre05g2309 Cre-Chr5:34642720 1.70E-42 transposed
Cre05g2309 Cre-Chr5:34642720 Cre08g0734 Cre-Chr8:20400979 7.70E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2309 K01728 - csv:101205739 914.835