Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2324 ATGCTTGGCCTTCATCAAGCGGAGCTTCCACTTTTTAAGCAACAGTCCTTGCTTTGCTTTGTGGAGCTCCGCCAATTTGCTTCATCGTGCTCCGGCGAACGATCGCAATTCGGCCATGAACTGTCTTCAAAACCTTTCGATGTCAGTTCTGAAACTGAAATCATCATCTCCTCCTTCCGATTCATTCAAATCTTTTCTCACAATCTTTTTTCCTCTCCGAATTTCAGATCATCTTCTTTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGATTGTTTCGATTGATACAGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGTCGAGGAAAAGGAGGAAAAATCTGAAATATACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGAATGAACTACAACTTTATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGGATTTTGATGCATTTGACCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACAGCCGATATTCTTTTAGGATTTAGAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCACAACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGGTAGTGATAGGGCAATTCTTCGGGGAAGGTTAACCGGAGATGAAGCAGAACTCACAGCCGAAGAAAGAAGCAAAATAAGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGA 1359 42.97 MLGLHQAELPLFKQQSLLCFVELRQFASSCSGERSQFGHELSSKPFDVSSETEIIISSFRFIQIFSHNLFSSPNFRSSSFPFRSFKCRQRQPEFQLCNLIVSIDTGDKELYRSTSTFYREVSGSTSSAEMSGAEVDDVEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADILLGFRKKPVTLSWEDDQCTTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRAILRGRLTGDEAELTAEERSKIREFLEACPDEN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34808855 34817882 - CrPI670011_05g023240.1 Cre05g2324 498837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2324 452 CDD E_set_AMPKbeta_like_N 328 409 - -
Cre05g2324 452 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 162 345 - -
Cre05g2324 452 CDD DSP_laforin-like 168 315 IPR045204 GO:0019203(InterPro)
Cre05g2324 452 Gene3D Immunoglobulins 324 416 IPR013783 -
Cre05g2324 452 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 77 451 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cre05g2324 452 SMART dsp_5 169 315 IPR020422 GO:0006470(InterPro)
Cre05g2324 452 ProSiteProfiles Dual specificity protein phosphatase domain profile. 169 326 IPR020422 GO:0006470(InterPro)
Cre05g2324 452 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 324 414 - -
Cre05g2324 452 Pfam Dual specificity phosphatase, catalytic domain 225 307 IPR000340 GO:0016311(InterPro)
Cre05g2324 452 Pfam Glycogen recognition site of AMP-activated protein kinase 328 412 IPR032640 -
Cre05g2324 452 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 166 310 IPR029021 -
Cre05g2324 452 SUPERFAMILY E set domains 327 409 IPR014756 -
Cre05g2324 452 Gene3D Protein tyrosine phosphatase superfamily 162 444 IPR029021 -
Cre05g2324 452 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 304 IPR000387 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2324 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2324 Cre-Chr5:34808855 Cre07g0876 Cre-Chr7:7445165 1.30E-36 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre09g0986 . 87 391 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.3e-122 435.3
Cre06g2686 . 125 1036 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1087.4
Cre06g1337 . 80 219 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 2.9e-42 168.7
Cre01g0393 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.4e-71 265.4
Cre05g2324 . 168 448 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 3.3e-115 411.8
Cre07g0876 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.7 6.9e-97 350.9
Cre10g1562 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.6 5.1e-203 704.1
Cre09g1063 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.2e-73 272.7
Cre03g1338 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.0 8.6e-54 207.6
Cre10g0493 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.2e-101 365.5
Cre11g0690 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.4e-80 297.0
Cre11g0690 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.4e-45 179.9
Cre10g0493 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.5e-43 171.0
Cre09g1063 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.6e-70 260.8
Cre03g1338 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 5.8e-58 221.1
Cre03g1338 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-78 288.1
Cre07g0660 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 8.1e-63 239.2
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre02g0980 . 68 671 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 4.8e-220 761.1
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G19420 61.0 9.4e-200 693.7
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre02g2507 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 1.5e-69 260.0
Cre10g0432 . 22 310 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 1.5e-100 363.2
Cre04g0825 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.5e-286 982.2
Cre04g0825 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.1e-258 888.6
Cre04g0825 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.2 1.3e-183 640.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005805 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37