Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2324 ATGCTTGGCCTTCATCAAGCGGAGCTTCCACTTTTTAAGCAACAGTCCTTGCTTTGCTTTGTGGAGCTCCGCCAATTTGCTTCATCGTGCTCCGGCGAACGATCGCAATTCGGCCATGAACTGTCTTCAAAACCTTTCGATGTCAGTTCTGAAACTGAAATCATCATCTCCTCCTTCCGATTCATTCAAATCTTTTCTCACAATCTTTTTTCCTCTCCGAATTTCAGATCATCTTCTTTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGATTGTTTCGATTGATACAGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGTCGAGGAAAAGGAGGAAAAATCTGAAATATACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGAATGAACTACAACTTTATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGGATTTTGATGCATTTGACCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACAGCCGATATTCTTTTAGGATTTAGAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCACAACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGGTAGTGATAGGGCAATTCTTCGGGGAAGGTTAACCGGAGATGAAGCAGAACTCACAGCCGAAGAAAGAAGCAAAATAAGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGA 1359 42.97 MLGLHQAELPLFKQQSLLCFVELRQFASSCSGERSQFGHELSSKPFDVSSETEIIISSFRFIQIFSHNLFSSPNFRSSSFPFRSFKCRQRQPEFQLCNLIVSIDTGDKELYRSTSTFYREVSGSTSSAEMSGAEVDDVEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADILLGFRKKPVTLSWEDDQCTTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRAILRGRLTGDEAELTAEERSKIREFLEACPDEN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34808855 34817882 - CrPI670011_05g023240.1 Cre05g2324 498837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2324 452 CDD E_set_AMPKbeta_like_N 328 409 - -
Cre05g2324 452 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 162 345 - -
Cre05g2324 452 CDD DSP_laforin-like 168 315 IPR045204 GO:0019203(InterPro)
Cre05g2324 452 Gene3D Immunoglobulins 324 416 IPR013783 -
Cre05g2324 452 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 77 451 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cre05g2324 452 SMART dsp_5 169 315 IPR020422 GO:0006470(InterPro)
Cre05g2324 452 ProSiteProfiles Dual specificity protein phosphatase domain profile. 169 326 IPR020422 GO:0006470(InterPro)
Cre05g2324 452 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 324 414 - -
Cre05g2324 452 Pfam Dual specificity phosphatase, catalytic domain 225 307 IPR000340 GO:0016311(InterPro)
Cre05g2324 452 Pfam Glycogen recognition site of AMP-activated protein kinase 328 412 IPR032640 -
Cre05g2324 452 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 166 310 IPR029021 -
Cre05g2324 452 SUPERFAMILY E set domains 327 409 IPR014756 -
Cre05g2324 452 Gene3D Protein tyrosine phosphatase superfamily 162 444 IPR029021 -
Cre05g2324 452 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 304 IPR000387 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2324 Cre-Chr5:34808855 Cre07g0876 Cre-Chr7:7445165 1.30E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2324 - - - 0.0