Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2327 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAAAGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTTGATAGTCGAATTACCGTTCTCCCGAATGCAGCATCAGATGATAAAGCATGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCTGAGCAAGCAAGGGACCTCATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCAGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGTGTCATTCGAATGAGAACGATGATGGCTCCGAGTCCTCTTGGAATCCTTCACATGTTGGAGACGGTGCATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCTGAAGGCTCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAGCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAAGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAGAAGATTGCCTCTTTTGAGGATGCGAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGAATGCTTAAAATGGATGAATTTTTGAAGAACCAAATCTTTGCAACTCATGCAGTTGCTGCTACAGGCTCGGTGACACTAAGCACTGTTCTTACTTACCCTCTTGACACTATCAAAACTCTAATCCAGGTTGGTTCTGATCCTTTAGGATCTGGTAAACAGTTGACGATTACTCAGGTTTTACAGAGAATTCGATCTTTCTCAGGAAATTCAGGTTTGTATAGTGGATTTGGATGGTTGGCCTTTGGGAGACTATTCGGGATAGGAGCTCGATTTGGAATATATGAAATTGTGACAGCATTTTATAAAGATGGTCGTGAAGATGATTACGTGCATGTGTCCGAGGCTCTTCTAGCTGGACTTATGGCTGGTGCTGCCGAATCATTGATATGCTCTCCATTTGAGCTTGTTAAACTTCGTGCCCAGGTGACCTCCGCAGTTCGTTTACCAAGCCCAAGTTCTCTCGTCGGACAAGAAAGAGCTCTTGCACCTTCTATGTCAAGATTTCTTCATCGCTATACACTGGATCAGAAAGCCTTAAACCATTCAGTTGGTCTTTTATCCACCCTAACAACTAAGCACCCAAATATAAAAGGTGCTTTACTAGAGTATCCATGGATGATGACGGGGTCTGGGAGGCCACCTGCAGTCAGCAATGTGCATAGGCCATCAGATATCATTTCACTAGAAGGATGGCAAGCATTTTGGAGAGGTCTACGATCAGGGATTGCGAGGGATTCCATCTTTAGTGGCGTATTTTTCTCAACCTGGCAATTTCTGCACCAGTCTATGCTTATTTGGAAGAGCATCGAGATGGATCCACCACCCAGGTCAAATGATGAAGTAGGCCCACTGTCTCCGTTTTCAGTTAGTCTTGCAGCTGGATTTTCAGGTGCAGTTGCTGCGGCTGCTTCTCATGGTTTTGATACTGCCAAGAGTCGATCTCTATGCACCGTGCTGCCCAAGTATGTGGTCATGGAGAGAAAGTATCTCAAATGGCGGAGACCGGGTAATAGATTCGAGAGAACTACAGGGATTCATCCTGCAGATCGAAGTCTCCTGTTTCGTGGCGTAGGATTGCGAATGGCTCGCTGTGGTTTAGGGTCATTTTTTATGTGCAATGTTAAGTTTTCATCTTGTGTGAATTATACATCTCTAAAGAAGAGGCTACGAGGCTGCTGA 2646 43.35 MLAMEKDFDAKLMIQSNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGCHSNENDDGSESSWNPSHVGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNRMLKMDEFLKNQIFATHAVAATGSVTLSTVLTYPLDTIKTLIQVGSDPLGSGKQLTITQVLQRIRSFSGNSGLYSGFGWLAFGRLFGIGARFGIYEIVTAFYKDGREDDYVHVSEALLAGLMAGAAESLICSPFELVKLRAQVTSAVRLPSPSSLVGQERALAPSMSRFLHRYTLDQKALNHSVGLLSTLTTKHPNIKGALLEYPWMMTGSGRPPAVSNVHRPSDIISLEGWQAFWRGLRSGIARDSIFSGVFFSTWQFLHQSMLIWKSIEMDPPPRSNDEVGPLSPFSVSLAAGFSGAVAAAASHGFDTAKSRSLCTVLPKYVVMERKYLKWRRPGNRFERTTGIHPADRSLLFRGVGLRMARCGLGSFFMCNVKFSSCVNYTSLKKRLRGC 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34849497 34862137 + CrPI670011_05g023270.1 Cre05g2327 498840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2327 881 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Cre05g2327 881 Pfam Mitochondrial carrier protein 502 591 IPR018108 -
Cre05g2327 881 Pfam Mitochondrial carrier protein 600 635 IPR018108 -
Cre05g2327 881 MobiDBLite consensus disorder prediction 331 372 - -
Cre05g2327 881 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Cre05g2327 881 FunFam 3-phosphoinositide-dependent protein kinase 1 359 489 - -
Cre05g2327 881 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2327 881 Gene3D Mitochondrial carrier domain 502 872 IPR023395 -
Cre05g2327 881 SUPERFAMILY PH domain-like 305 490 - -
Cre05g2327 881 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2327 881 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cre05g2327 881 SUPERFAMILY Mitochondrial carrier 503 860 IPR023395 -
Cre05g2327 881 ProSiteProfiles Solute carrier (Solcar) repeat profile. 500 589 IPR018108 -
Cre05g2327 881 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2327 881 MobiDBLite consensus disorder prediction 338 372 - -
Cre05g2327 881 SUPERFAMILY Protein kinase-like (PK-like) 41 352 IPR011009 -
Cre05g2327 881 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Cre05g2327 881 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 325 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre05g2327 881 Coils Coil 469 489 - -
Cre05g2327 881 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cre05g2327 881 Gene3D - 357 494 IPR011993 -
Cre05g2327 881 Pfam PH domain 386 489 IPR033931 -
Cre05g2327 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2327 Cre-Chr5:34849497 Cre06g2529 Cre-Chr6:32935047 2.70E-54 dispersed
Cre05g2327 Cre-Chr5:34849497 Cre02g1369 Cre-Chr2:21989427 1.10E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64167 PF00069 Pkinase 4.90E-65 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2327 K06276 - csv:101212874 939.488