Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2344 ATGGAACAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCGTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCACTGTTGAAGGAAATGCAACATGGCAACATTGTAAGGTTACAAGATGTAGTGCATAGCGAGAAGCGGCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTATCAAATTCTTCGTGGCATTGCATACTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTACTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGATTTTGGACTGGCAAGAGCGTTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCCGTGGACGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAATCAGCGGCCATTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGCACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGATCTTCTCTCTAAAATGCTTTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCCCTCGAGCATGAATACTTCAAAGATGTTGGAAAAGCTCACGTGAAGGGGGAGCAATTGGATAAGCTTGTGGTTAAACATGTATACAAGCCGTCTGTTGGCATGATCGTTTTTCTCTCTTCTGTTCTTCTTCTTTCACGAAAGCTCCGAAAATTTGTTCATATTTCTGCACTCATTTTCCTCTCTGCTCCAAGAAAATTATTGCATCATAAAATTCGATATTGTTTGGGTTCGTCGGGTGAAGTTGAAATACCGATAGGCCAGCGTTGGCATTGGAGAAACTTAATTAGATCAGATTATTTGGGCTCTGTAATTTCTAAAGAGATGGGCACATCTGAAGCAGCCCTGCAAATCTTTTCAGGGGTTGTACCTCCGGCTATATGTTCAAACTCGTATTTGAGCAATTTGGACTCCAAATTTTCTTTTAAATCGCCAGTGAAATATGTGAAGAAAGGGGTCTTGAGAAATATGCATTTGTCCAAATGCTCGAGTAGGCTATTACAAAGGATAGAGACAGGCTTTAGTGGGAAAACAAAATGTAATCGTCGTCTGTTATACAGTTGCAGATGCCAACAAGCAAAAAGTGCGAGTGGTATGACTCCAGAAGGTGGAAATGGAACATGGTTTGTGGACAGTGCAGAGACATCGCATCCAATCAACAGGATGCCAAATGGATCAAGTGCTTTGGAATTTCAAGATGTTCAGTCTGCAAAACAGGAAATTAAGAATTCAATTTCTAATGGCACAAATGGAGCAGTTAGAGATTCCATTAAGAAGATTAGTATTGAATCTATTGAGGATGAGGCGTGGGACTTGCTTCGGGAATCCATTGTTTATTACTGTGGCAGTCCGATTGGAACGATTGCTGCAAGGGACCCTACGAGTTCTAATTTACTGAATTATGATCAGGTCTTTATACGTGATTTCATACCTTCTGGTATAGCTTTTTTATTGAAGGGAGAATACGATATTGTTCGCAATTTTATCCTCCACACGCTTCAGTTGCAGAGCTGGGAAAAAACTATGGACTGTCACAGTCCTGGTCAAGGATTGATGCCTGCTAGTTTCAAGGTCCGAACAGTTCCTCTGGATGGTGATGACTCAGCAACAGAAGAGGTTTTGGATCCTGACTTTGGGGAAGCAGCAATTGGCCGTGTTGCACCTGTCGATTCAGGATTGTGGTGGATAATTTTATTGCGTGCATATGGAAAATGCTCCGGTGATCTCTCAGTTCAGGAGAGAGTTGATGTCCAAACTGGGATCAAAATGATCTTGAGGCTTTGTCTTGCTGATGGATTCGATATGTTCCCTACTTTATTGGTAACTGATGGTTCTTGTATGATAGATCGTCGTATGGGAATTCATGGTCACCCTCTGGAAATCCAAGCACTTTTTTATTCAGCATTAGTTTGTGCACGAGAGATGCTTACTCCTGAGGATGGATCAGCTGATCTTATCCGTGCACTTAACAATCGTTTGGTGGCTCTTTCATTTCATATCAGAGAGTATTATTGGGTTGATTTGAGAAAATTAAATGAAATTTATCGTTACAAGACAGAAGAGTATTCATACGATGCAGTCAACAAATTCAACATCTACCCAGATCAAATTCCTTCTTGGTTGGTGGAATGGATGCCTAGTAAAGGAGGTTATCTAATTGGAAATTTGCAACCGGCTCACATGGATTTCCGGTTCTTTTCTCTAGGAAATTTGTGGTCCATCGTAAGTAGTCTTACTACAATTGGCCAGTCCCATGCCATTTTGGATCTCATTGAATCCAAATGGGGAGATTTAGTTGCAGACATGCCATTCAAGATTTGTTACCCTGCTCTTGAAGGTCAGGAATGGCAGATTATCACTGGCAGTGATCCCAAGAACACGCCATGGTCATACCACAATGCAGGTTCGTGGCCAACATTGCTGTGGCAGCTCACAGTTGCATGCATAAAGATGAACAGAACTGACATTGCAGCAAGAGCCATTGAGATTGCCGAGCGACGTCTGGCTAGAGACAAGTGGCCTGAATATTACGACACTAAGAAAGGAAGGTTCATTGGGAAACAAGCACGCCTATTTCAAACATGGTCAATTGCAGGATACCTCGTGGGCAAGCTCCTACTCACTGAGCCGAGTAAGGCTAAAATTTTGATAACCGAAGAGGACTCGGATCTTGTCAATGCCTTCTCTTGTATGATCAGCGCCAGCCCAAAAAGAAAGCGTGGAGCCAATGGGGTGGCTGCTACTCCCCAAATTTATGCTCCAACAAATATAGGATGTTTTGTACCAACTCAGATTCTTTGGGTTGGGCAGTTCTCCAACCCCAACAACACATACAAAGATGGCCAGCCATTCCTTTTTTATTACTGGGTTGCATCGAGTCAGATTGGGCTTAATAAATCAAACATTACGGGTGCATCGACGCCGGTGGTGCAATAG 3276 42.86 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGKAHVKGEQLDKLVVKHVYKPSVGMIVFLSSVLLLSRKLRKFVHISALIFLSAPRKLLHHKIRYCLGSSGEVEIPIGQRWHWRNLIRSDYLGSVISKEMGTSEAALQIFSGVVPPAICSNSYLSNLDSKFSFKSPVKYVKKGVLRNMHLSKCSSRLLQRIETGFSGKTKCNRRLLYSCRCQQAKSASGMTPEGGNGTWFVDSAETSHPINRMPNGSSALEFQDVQSAKQEIKNSISNGTNGAVRDSIKKISIESIEDEAWDLLRESIVYYCGSPIGTIAARDPTSSNLLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALVCAREMLTPEDGSADLIRALNNRLVALSFHIREYYWVDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPSWLVEWMPSKGGYLIGNLQPAHMDFRFFSLGNLWSIVSSLTTIGQSHAILDLIESKWGDLVADMPFKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTVACIKMNRTDIAARAIEIAERRLARDKWPEYYDTKKGRFIGKQARLFQTWSIAGYLVGKLLLTEPSKAKILITEEDSDLVNAFSCMISASPKRKRGANGVAATPQIYAPTNIGCFVPTQILWVGQFSNPNNTYKDGQPFLFYYWVASSQIGLNKSNITGASTPVVQ 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35045280 35058603 + CrPI670011_05g023440.1 Cre05g2344 498857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2344 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2344 1091 PANTHER - 513 1020 IPR024746 GO:0004575(PANTHER)|GO:0005987(PANTHER)|GO:0009507(PANTHER)|GO:0033926(InterPro)
Cre05g2344 1091 Gene3D - 579 978 IPR012341 GO:0005975(InterPro)
Cre05g2344 1091 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Cre05g2344 1091 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2344 1091 FunFam Cell division control protein 2 homolog 86 292 - -
Cre05g2344 1091 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cre05g2344 1091 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Cre05g2344 1091 Gene3D Transferase(Phosphotransferase) domain 1 86 308 - -
Cre05g2344 1091 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2344 1091 FunFam probable alkaline/neutral invertase B 575 983 - -
Cre05g2344 1091 SMART serkin_6 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2344 1091 Pfam Alkaline and neutral invertase 549 990 IPR024746 GO:0033926(InterPro)
Cre05g2344 1091 SUPERFAMILY Six-hairpin glycosidases 545 990 IPR008928 GO:0005975(InterPro)
Cre05g2344 1091 CDD STKc_CDK1_CdkB_like 4 287 - -
Cre05g2344 1091 FunFam Cell division control protein 2 1 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0818 Cre-Chr5:7252708 Cre05g2344 Cre-Chr5:35045280 1.10E-217 dispersed
Cre05g2344 Cre-Chr5:35045280 Cre09g0957 Cre-Chr9:9786972 1.40E-158 dispersed
Cre11g0723 Cre-Chr11:4363799 Cre05g2344 Cre-Chr5:35045280 5.20E-36 dispersed
Cre05g2344 Cre-Chr5:35045280 Cre02g2078 Cre-Chr2:34274779 1.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64168 PF12899 Glyco_hydro_100 5.10E-214 CL0059 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2344 - - - 0.0