Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2382 ATGAACTCAGTTCCATTCATTTGCCTTCTCCTTCTCTCTCGCCTTCTCGCCGGAGCTTCCGATTCTTCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCATCCATCCGGTTCTCCCCCTCCGATCCATACGGCTACGGGAAATTCTCCGTCAAGAAATGTCTCAAACAAGCGATCAAAATGTCGAGCGTAATCAGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAATGACTGCAGAGAACTTTCCGATTTGAATGTGGAGTTTCTTCGGTCAATCCAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTCTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGATGGATTGGTGGAATCGAGGAGTAGTTTGGGAAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGCAGAAGGGAAATAGAGATGGAGGGAATTTTCCGGCGGGTGCGCGGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATAAAATGGGATCATGCAACAACCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAACTCAATGCCTCAAGATGGCTACTTCGTTATCTATGTTAGAGAAGGATACTATGAAGAATACGTCGTCATCCCCAAATTCAAAACCAATGTAATGCTCATCGGAGACGGCATTAATCGAACCATCATCACCGGGAACCATAGCGTCGTCGATGGTTGGACGACTTATAACTCTTCAACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTAGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTTCATTCCCTAAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAACGCCTTCACCGCGCAGGGCCGAACCGATCCGAACCAAAACACAGGCATCTCGATCCACAACTGCAGCATCAAGGCTGCACCCGACTGGGCGATGGATTGGAATGCGACGACGACGACGAACTACCTCGGGCGACCGTGGAAACAGTACTCAAGGACAGTGTATATGCAGTCTTATATTGGGGATTTGATAAGCCCAGTGGGATGGTTGGAATGGAATGGAACAGTAGGATTAGAGACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTAACACAAGCTTGAGGGTGAATTGGCCTGGATATAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATACCTTTCTCTGGAGGTTTGTTAATTAAGTGA 1704 48.18 MNSVPFICLLLLSRLLAGASDSSPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISDYLDRGRDSRLNQREAGALNDCRELSDLNVEFLRSIQGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGELYSVSLGLVSNSLSRRWKKRRQKGNRDGGNFPAGARSREPLNTLIKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVIPKFKTNVMLIGDGINRTIITGNHSVVDGWTTYNSSTFTVCGDGFVAIDMTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCSIKAAPDWAMDWNATTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEFENYGPGANTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIK 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35362266 35368433 - CrPI670011_05g023820.1 Cre05g2382 498895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2382 567 CDD PMEI-like_3 28 179 - -
Cre05g2382 567 SUPERFAMILY Pectin lyase-like 245 563 IPR011050 -
Cre05g2382 567 Gene3D - 244 564 IPR012334 -
Cre05g2382 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cre05g2382 567 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Cre05g2382 567 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cre05g2382 567 PANTHER PECTINESTERASE 18 554 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre05g2382 567 FunFam Pectinesterase 244 564 - -
Cre05g2382 567 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Cre05g2382 567 Pfam Pectinesterase 250 550 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre05g2382 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Cre05g2382 567 NCBIfam pectinesterase inhibitor domain 3 152 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2382 Cre-Chr5:35362266 Cre09g0531 Cre-Chr9:4970996 2.80E-150 dispersed
Cre05g2382 Cre-Chr5:35362266 Cre09g1889 Cre-Chr9:37538322 3.40E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2382 K01051 - csv:101206112 1032.32