Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2383 | ATGGGTGTTTGGGTTTTGGCGCCGGCGACTGTTCTTTCCTTGCCCTTCTTCTCTCTGTTCTTCCACTTCGCTCTTCGAATCCACACCTCACTTCACTTCCCCATAAACCAGTGCAGTTCTGGCTCCTCCAGCTCCATGAATGCCCCAATAATTGATCCGCTGCAGGGAGATTTCCCGGAGGTTATAGAAGAGTTTCTGGAACATGGAGTGATGAAATGCATCGCCTTTAACCGTCGTGGTACTCTTTTAGCAGCTGGATGCTCCGATGGAAACTGTGTTATCTGGGACTTTGAGACCAGAGGCATCGCTAAAGAGCTCAAAGATAAAGATTGTGTTTCTGCCATAACTAGTGTTTGTTGGTCAAAATATGGCCATCAAATTCTTGTATCTGCTGCTGATAGGTCATTAACACTGTGGGATGTTCTCAAGGGGGAGAAGATAAACCGCATAACTCTTCAACAGACCCCTTTACAGGCTCGTTTGCATCCTGGATCTTCTAATCCATCTCTCTGCCTGGCATGCCCTCTCTCATCTGCTCCTATGATTGTTGACTTAAAGACTGGAAGCACAACTCTACTTCCAGTTTGTATTTCTGATGCAGATACAGCTTCTTCTCGAGGCAAAGTTTCGGATGGAACTCCACCTTTTACTCCTACAGCAGCGTGCTTTAACAAGTATGGCAATCTAGTTTATGTAGGAAATTCAAAAGGTGAAATACTTGTAATAGATTACGAAAGAGTTCAGATAGAGGCCATGGTTCCAATTTCTGGAGGTGCTGTTGTCAAGAACATTGTATTTAGTAGAAATGGTCAATATCTGCTCACTAATTCTAATGACAGAACAATTAGAATCTATGAAAATCTCCTACCCAATAAAGATGGATTGAAAGTCATTGACAAAATTACGAAAGAGTTCGATGGGCTTGATGGTGCTGAGAAGCTGAAGGCTGTTGGCACAAAGTGTTTAACTCTTTTCCGGGAGTTTCAAGATTCGATCACTAGAATGCACTGGAAAGCTCCTTGTTTTAGTGGTGATGGTGAGTGGGTTGTTGGTGGGTCTGCGAGCAAAGGTGAACACAAGATTTACATTTGGGATCGGGCAGGTTATCTTGTAAAAATCCTCGAAGGTCCGAAGGAAGCATTGATTGATTTAGGCTGGCATCCTGTTCATCCCATTGTTGTCTCTGTTTCACTTACTGGCTTGATTTATATTTGGGCTAAAGATTATACTGAGAATTGGAGTGCTTTTGCTCCTGATTTTAAAGAGCTCGAGGAAAACGAAGAATACATAGAAAGAGAAGATGAATTTGATCTAAATCCTGAAACTGAAAAGGTGAAAGAACCCGATGTTAATGAAGATGAAGAAGTTGATATCGTAAACGTGGAGAAGGATTCAGCTTTCAGTGATTCAGATACTTCACAAGATGAACTATGCTTCTTGCCAGCTATCCCATGTCCCGATATCATCGAGCAGCAGGATAAGTGCGTAGAGATTTCTTCTAAAATGGTCGATAATAACAATTCTGGATCCCCACTTTCAGAGGAGGCTGGTGTAAATGGCCGTACAACCAATCATGCATCAAGTCCTATGGAAGTGTTGGACAACACCGACGATGCAGGAGGAACACGGATGAAAAGGAAACGGAAACCGTCGGAGAAAGGACTTGAGTTGCAAGCAGAGAAGGTGAAGAAACCCTCTAAACCTTCAAGTAGATTGTCTAAATTTAAAACAAAGTCCATGGTTCATCAGGATACTAGTAATGGTTACCAAAATGCTTCTCCAAATTTCCCCCTCTGTACATTGCAATCCAATTCAAACGCCATTTTATTACAGCATTTCACTTCCACTTCTTTAATTTCCACTCCCGATCTTCCTCAGTCGAAATCTCAATCCTCTCCGCCGCCGTCCGCCATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAATCGTACACGAATGAAATGGAAGAAATGCGAAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAATCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCGGGCCCGCCCGACCTTCAGTTCTCGATCGAGAACAACCCAGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTGGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA | 3189 | 44.62 | MGVWVLAPATVLSLPFFSLFFHFALRIHTSLHFPINQCSSGSSSSMNAPIIDPLQGDFPEVIEEFLEHGVMKCIAFNRRGTLLAAGCSDGNCVIWDFETRGIAKELKDKDCVSAITSVCWSKYGHQILVSAADRSLTLWDVLKGEKINRITLQQTPLQARLHPGSSNPSLCLACPLSSAPMIVDLKTGSTTLLPVCISDADTASSRGKVSDGTPPFTPTAACFNKYGNLVYVGNSKGEILVIDYERVQIEAMVPISGGAVVKNIVFSRNGQYLLTNSNDRTIRIYENLLPNKDGLKVIDKITKEFDGLDGAEKLKAVGTKCLTLFREFQDSITRMHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLGWHPVHPIVVSVSLTGLIYIWAKDYTENWSAFAPDFKELEENEEYIEREDEFDLNPETEKVKEPDVNEDEEVDIVNVEKDSAFSDSDTSQDELCFLPAIPCPDIIEQQDKCVEISSKMVDNNNSGSPLSEEAGVNGRTTNHASSPMEVLDNTDDAGGTRMKRKRKPSEKGLELQAEKVKKPSKPSSRLSKFKTKSMVHQDTSNGYQNASPNFPLCTLQSNSNAILLQHFTSTSLISTPDLPQSKSQSSPPPSAMRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV | 1062 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35373934 | 35385855 | - | CrPI670011_05g023830.1 | Cre05g2383 | 498896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2383 | 1062 | FunFam | AP2-like ethylene-responsive transcription factor | 819 | 880 | - | - | |
Cre05g2383 | 1062 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 113 | 149 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SUPERFAMILY | DNA-binding domain | 819 | 880 | IPR016177 | GO:0003677(InterPro) | |
Cre05g2383 | 1062 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 83 | 97 | IPR019775 | - | |
Cre05g2383 | 1062 | Gene3D | AP2/ERF domain | 721 | 786 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | Gene3D | AP2/ERF domain | 819 | 880 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | CDD | AP2 | 819 | 880 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | PANTHER | RETINOBLASTOMA-BINDING PROTEIN 5 | 46 | 563 | IPR037850 | GO:0048188(InterPro)|GO:0048188(PANTHER)|GO:0051568(PANTHER) | |
Cre05g2383 | 1062 | Pfam | AP2 domain | 819 | 870 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | SUPERFAMILY | WD40 repeat-like | 72 | 408 | IPR036322 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | ProSiteProfiles | AP2/ERF domain profile. | 820 | 878 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | FunFam | AP2-like ethylene-responsive transcription factor | 720 | 786 | - | - | |
Cre05g2383 | 1062 | SMART | rav1_2 | 721 | 790 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | SMART | rav1_2 | 820 | 884 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | Gene3D | - | 64 | 170 | IPR015943 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | ProSiteProfiles | AP2/ERF domain profile. | 721 | 784 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | FunFam | Compass component swd1 | 205 | 465 | - | - | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 538 | 567 | - | - | |
Cre05g2383 | 1062 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 261 | 286 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 619 | 707 | - | - | |
Cre05g2383 | 1062 | PRINTS | Ethylene responsive element binding protein signature | 722 | 733 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | PRINTS | Ethylene responsive element binding protein signature | 860 | 880 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 619 | 677 | - | - | |
Cre05g2383 | 1062 | SUPERFAMILY | DNA-binding domain | 720 | 786 | IPR016177 | GO:0003677(InterPro) | |
Cre05g2383 | 1062 | CDD | AP2 | 721 | 785 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 502 | 589 | - | - | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 572 | 589 | - | - | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 894 | 935 | - | - | |
Cre05g2383 | 1062 | FunFam | Retinoblastoma-binding-like protein E | 63 | 165 | - | - | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 894 | 940 | - | - | |
Cre05g2383 | 1062 | Pfam | WD domain, G-beta repeat | 261 | 285 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | Pfam | WD domain, G-beta repeat | 113 | 140 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | Pfam | WD domain, G-beta repeat | 65 | 96 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | Gene3D | - | 171 | 428 | IPR015943 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 71 | 105 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SMART | WD40_4 | 58 | 96 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SMART | WD40_4 | 191 | 243 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SMART | WD40_4 | 248 | 286 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SMART | WD40_4 | 318 | 365 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SMART | WD40_4 | 367 | 406 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | SMART | WD40_4 | 99 | 140 | IPR001680 | GO:0005515(InterPro) | |
Cre05g2383 | 1062 | MobiDBLite | consensus disorder prediction | 502 | 531 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2383 | Cre-Chr5:35373934 | Cre06g2214 | Cre-Chr6:29955321 | 9.00E-65 | dispersed | |
Cre06g2136 | Cre-Chr6:29134044 | Cre05g2383 | Cre-Chr5:35373934 | 1.80E-55 | transposed | |
Cre08g0828 | Cre-Chr8:21371787 | Cre05g2383 | Cre-Chr5:35373934 | 2.80E-26 | transposed | |
Cre09g0328 | Cre-Chr9:3199921 | Cre05g2383 | Cre-Chr5:35373934 | 1.10E-75 | transposed | |
Cre10g1625 | Cre-Chr10:30335105 | Cre05g2383 | Cre-Chr5:35373934 | 6.00E-75 | transposed | |
Cre10g1709 | Cre-Chr10:31292876 | Cre05g2383 | Cre-Chr5:35373934 | 1.30E-46 | transposed | |
Cre05g2383 | Cre-Chr5:35373934 | Cre08g0826 | Cre-Chr8:21363585 | 6.30E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53766 | PF00847 | AP2 | 9.40E-09 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2383 | K14961 | - | csv:101209834 | 1031.94 |