Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2383 ATGGGTGTTTGGGTTTTGGCGCCGGCGACTGTTCTTTCCTTGCCCTTCTTCTCTCTGTTCTTCCACTTCGCTCTTCGAATCCACACCTCACTTCACTTCCCCATAAACCAGTGCAGTTCTGGCTCCTCCAGCTCCATGAATGCCCCAATAATTGATCCGCTGCAGGGAGATTTCCCGGAGGTTATAGAAGAGTTTCTGGAACATGGAGTGATGAAATGCATCGCCTTTAACCGTCGTGGTACTCTTTTAGCAGCTGGATGCTCCGATGGAAACTGTGTTATCTGGGACTTTGAGACCAGAGGCATCGCTAAAGAGCTCAAAGATAAAGATTGTGTTTCTGCCATAACTAGTGTTTGTTGGTCAAAATATGGCCATCAAATTCTTGTATCTGCTGCTGATAGGTCATTAACACTGTGGGATGTTCTCAAGGGGGAGAAGATAAACCGCATAACTCTTCAACAGACCCCTTTACAGGCTCGTTTGCATCCTGGATCTTCTAATCCATCTCTCTGCCTGGCATGCCCTCTCTCATCTGCTCCTATGATTGTTGACTTAAAGACTGGAAGCACAACTCTACTTCCAGTTTGTATTTCTGATGCAGATACAGCTTCTTCTCGAGGCAAAGTTTCGGATGGAACTCCACCTTTTACTCCTACAGCAGCGTGCTTTAACAAGTATGGCAATCTAGTTTATGTAGGAAATTCAAAAGGTGAAATACTTGTAATAGATTACGAAAGAGTTCAGATAGAGGCCATGGTTCCAATTTCTGGAGGTGCTGTTGTCAAGAACATTGTATTTAGTAGAAATGGTCAATATCTGCTCACTAATTCTAATGACAGAACAATTAGAATCTATGAAAATCTCCTACCCAATAAAGATGGATTGAAAGTCATTGACAAAATTACGAAAGAGTTCGATGGGCTTGATGGTGCTGAGAAGCTGAAGGCTGTTGGCACAAAGTGTTTAACTCTTTTCCGGGAGTTTCAAGATTCGATCACTAGAATGCACTGGAAAGCTCCTTGTTTTAGTGGTGATGGTGAGTGGGTTGTTGGTGGGTCTGCGAGCAAAGGTGAACACAAGATTTACATTTGGGATCGGGCAGGTTATCTTGTAAAAATCCTCGAAGGTCCGAAGGAAGCATTGATTGATTTAGGCTGGCATCCTGTTCATCCCATTGTTGTCTCTGTTTCACTTACTGGCTTGATTTATATTTGGGCTAAAGATTATACTGAGAATTGGAGTGCTTTTGCTCCTGATTTTAAAGAGCTCGAGGAAAACGAAGAATACATAGAAAGAGAAGATGAATTTGATCTAAATCCTGAAACTGAAAAGGTGAAAGAACCCGATGTTAATGAAGATGAAGAAGTTGATATCGTAAACGTGGAGAAGGATTCAGCTTTCAGTGATTCAGATACTTCACAAGATGAACTATGCTTCTTGCCAGCTATCCCATGTCCCGATATCATCGAGCAGCAGGATAAGTGCGTAGAGATTTCTTCTAAAATGGTCGATAATAACAATTCTGGATCCCCACTTTCAGAGGAGGCTGGTGTAAATGGCCGTACAACCAATCATGCATCAAGTCCTATGGAAGTGTTGGACAACACCGACGATGCAGGAGGAACACGGATGAAAAGGAAACGGAAACCGTCGGAGAAAGGACTTGAGTTGCAAGCAGAGAAGGTGAAGAAACCCTCTAAACCTTCAAGTAGATTGTCTAAATTTAAAACAAAGTCCATGGTTCATCAGGATACTAGTAATGGTTACCAAAATGCTTCTCCAAATTTCCCCCTCTGTACATTGCAATCCAATTCAAACGCCATTTTATTACAGCATTTCACTTCCACTTCTTTAATTTCCACTCCCGATCTTCCTCAGTCGAAATCTCAATCCTCTCCGCCGCCGTCCGCCATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAATCGTACACGAATGAAATGGAAGAAATGCGAAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAATCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCGGGCCCGCCCGACCTTCAGTTCTCGATCGAGAACAACCCAGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTGGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 3189 44.62 MGVWVLAPATVLSLPFFSLFFHFALRIHTSLHFPINQCSSGSSSSMNAPIIDPLQGDFPEVIEEFLEHGVMKCIAFNRRGTLLAAGCSDGNCVIWDFETRGIAKELKDKDCVSAITSVCWSKYGHQILVSAADRSLTLWDVLKGEKINRITLQQTPLQARLHPGSSNPSLCLACPLSSAPMIVDLKTGSTTLLPVCISDADTASSRGKVSDGTPPFTPTAACFNKYGNLVYVGNSKGEILVIDYERVQIEAMVPISGGAVVKNIVFSRNGQYLLTNSNDRTIRIYENLLPNKDGLKVIDKITKEFDGLDGAEKLKAVGTKCLTLFREFQDSITRMHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLGWHPVHPIVVSVSLTGLIYIWAKDYTENWSAFAPDFKELEENEEYIEREDEFDLNPETEKVKEPDVNEDEEVDIVNVEKDSAFSDSDTSQDELCFLPAIPCPDIIEQQDKCVEISSKMVDNNNSGSPLSEEAGVNGRTTNHASSPMEVLDNTDDAGGTRMKRKRKPSEKGLELQAEKVKKPSKPSSRLSKFKTKSMVHQDTSNGYQNASPNFPLCTLQSNSNAILLQHFTSTSLISTPDLPQSKSQSSPPPSAMRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35373934 35385855 - CrPI670011_05g023830.1 Cre05g2383 498896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2383 1062 FunFam AP2-like ethylene-responsive transcription factor 819 880 - -
Cre05g2383 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 149 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SUPERFAMILY DNA-binding domain 819 880 IPR016177 GO:0003677(InterPro)
Cre05g2383 1062 ProSitePatterns Trp-Asp (WD) repeats signature. 83 97 IPR019775 -
Cre05g2383 1062 Gene3D AP2/ERF domain 721 786 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 Gene3D AP2/ERF domain 819 880 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 CDD AP2 819 880 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 PANTHER RETINOBLASTOMA-BINDING PROTEIN 5 46 563 IPR037850 GO:0048188(InterPro)|GO:0048188(PANTHER)|GO:0051568(PANTHER)
Cre05g2383 1062 Pfam AP2 domain 819 870 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 SUPERFAMILY WD40 repeat-like 72 408 IPR036322 GO:0005515(InterPro)
Cre05g2383 1062 ProSiteProfiles AP2/ERF domain profile. 820 878 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 FunFam AP2-like ethylene-responsive transcription factor 720 786 - -
Cre05g2383 1062 SMART rav1_2 721 790 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 SMART rav1_2 820 884 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 Gene3D - 64 170 IPR015943 GO:0005515(InterPro)
Cre05g2383 1062 ProSiteProfiles AP2/ERF domain profile. 721 784 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 FunFam Compass component swd1 205 465 - -
Cre05g2383 1062 MobiDBLite consensus disorder prediction 538 567 - -
Cre05g2383 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 286 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 MobiDBLite consensus disorder prediction 619 707 - -
Cre05g2383 1062 PRINTS Ethylene responsive element binding protein signature 722 733 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 PRINTS Ethylene responsive element binding protein signature 860 880 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 MobiDBLite consensus disorder prediction 619 677 - -
Cre05g2383 1062 SUPERFAMILY DNA-binding domain 720 786 IPR016177 GO:0003677(InterPro)
Cre05g2383 1062 CDD AP2 721 785 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2383 1062 MobiDBLite consensus disorder prediction 502 589 - -
Cre05g2383 1062 MobiDBLite consensus disorder prediction 572 589 - -
Cre05g2383 1062 MobiDBLite consensus disorder prediction 894 935 - -
Cre05g2383 1062 FunFam Retinoblastoma-binding-like protein E 63 165 - -
Cre05g2383 1062 MobiDBLite consensus disorder prediction 894 940 - -
Cre05g2383 1062 Pfam WD domain, G-beta repeat 261 285 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 Pfam WD domain, G-beta repeat 113 140 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 Pfam WD domain, G-beta repeat 65 96 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 Gene3D - 171 428 IPR015943 GO:0005515(InterPro)
Cre05g2383 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 71 105 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SMART WD40_4 58 96 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SMART WD40_4 191 243 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SMART WD40_4 248 286 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SMART WD40_4 318 365 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SMART WD40_4 367 406 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 SMART WD40_4 99 140 IPR001680 GO:0005515(InterPro)
Cre05g2383 1062 MobiDBLite consensus disorder prediction 502 531 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2383 Cre-Chr5:35373934 Cre06g2214 Cre-Chr6:29955321 9.00E-65 dispersed
Cre06g2136 Cre-Chr6:29134044 Cre05g2383 Cre-Chr5:35373934 1.80E-55 transposed
Cre08g0828 Cre-Chr8:21371787 Cre05g2383 Cre-Chr5:35373934 2.80E-26 transposed
Cre09g0328 Cre-Chr9:3199921 Cre05g2383 Cre-Chr5:35373934 1.10E-75 transposed
Cre10g1625 Cre-Chr10:30335105 Cre05g2383 Cre-Chr5:35373934 6.00E-75 transposed
Cre10g1709 Cre-Chr10:31292876 Cre05g2383 Cre-Chr5:35373934 1.30E-46 transposed
Cre05g2383 Cre-Chr5:35373934 Cre08g0826 Cre-Chr8:21363585 6.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53766 PF00847 AP2 9.40E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2383 K14961 - csv:101209834 1031.94