Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2404 ATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCTTCCGCCCGAAGAGCCTCTTCCAGATCTCCTCTCTCCAATCCCAATCCAAGGATTTCTCCATCTACAACCTCTCGCGCTTCTCCTTATGGGTATATCCTCTCTCGCGTAGCTGAGTATGCGACTTCTGCTGCGGCGGCTGCGCCTCCGTCACCACCTCCTCCGGCCAAGGATGCTGGTAAAGGAGGGAAGATCACTGATGAGTTTACTGGTGCCGGTGCGGTCGGAGAGGTGTGTCAGGTGATCGGTGCTGTTGTCGATGTGAGATTCGACGAAGGATTGCCGCCTATCCTGACGGCTCTTGAGGTTCTTGACCACTCGATCCGTTTGGTGCTCGAGGTTGCTCAGCATTTGGGGGAGAACATGGTTCGGACTATTGCTATGGATGGGACTGAAGGGCTTGTTAGAGGACAGCGTGTGCTCAATACTGGTTCTCCCATCACTGTACCTGTTGGTAGGGCTACACTTGGCCGTATCATAAATGTTATTGGAGAACCCATTGATGAGAGAGGCGATCTTAAGACGGACCACTTCCTACCAATTCATAGAGAAGCTCCAGCATTCGTTGAGCAGGCAACGGAACAGCAAATTCTTGTCACTGGTATCAAGGTTGTTGACCTTCTTGCACCGTACCAAAGAGGTGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTTCTGATTATGGAACTTATTAACAATGTGGCCAAAGCTCATGGTGGGTTTTCTGTGTTTGCTGGTGTTGGGGAACGCACTCGTGAAGGCAATGACCTGTACAGGGAAATGATTGAAAGTGGTGCCGATAGCAAATGTGCCCTTGTCTATGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTCTTCATTGACAACATTTTCCGTTTTACCCAGGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTCGGTTATCAACCAACTTTGGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACAAAGAAAGGTTCTATCACTTCAGTTCAAGCTATCTACGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCCACCACATTTGCTCACTTGGATGCCACAACTGTGTTGTCACGACAGATCTCTGAGCTTGGTATCTATCCTGCTGTCGATCCATTGGACTCTACATCTCGAATGCTTTCTCCTCATATTTTGGGAGAGGATCACTATAATACTGCTCGTGGTGTACAGAAGGTTCTTCAAAATTACAAAAACTTGCAAGATATTATTGCCATTTTGGGTATGGATGAGCTTAGTGAAGATGACAAGTTGACGGTTGCACGTGCTCGTAAGATCCAAAGGTTCTTGAGTCAGCCTTTCCATGTTGCAGAAGTGTTCACGGGTGCTCCCGGAAAATACGTCGAGTTGAAAGAGAGCATTGCCAGCTTCCAGGGGGTGTTGGATGGGAAGTACGATGATCTTCCAGAACAATCATTTTACATGGTGGGAGGTATTGAGGAGGTGATTGCCAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCTTAG 1653 48.7 MASRRLLSSLLRSSARRASSRSPLSNPNPRISPSTTSRASPYGYILSRVAEYATSAAAAAPPSPPPPAKDAGKGGKITDEFTGAGAVGEVCQVIGAVVDVRFDEGLPPILTALEVLDHSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGDLKTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35535442 35538867 - CrPI670011_05g024040.1 Cre05g2404 498917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2404 550 PIRSF ATPase_subunit_beta 6 550 - -
Cre05g2404 550 FunFam ATP synthase subunit beta 76 158 - -
Cre05g2404 550 Gene3D ATP synthase, F1 beta subunit 1 52 IPR042079 -
Cre05g2404 550 MobiDBLite consensus disorder prediction 1 39 - -
Cre05g2404 550 FunFam ATP synthase subunit beta 429 548 - -
Cre05g2404 550 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 213 426 IPR000194 GO:0005524(InterPro)
Cre05g2404 550 FunFam ATP synthase subunit beta 159 428 - -
Cre05g2404 550 CDD ATP-synt_F1_beta_C 433 540 - -
Cre05g2404 550 MobiDBLite consensus disorder prediction 56 77 - -
Cre05g2404 550 NCBIfam F0F1 ATP synthase subunit beta 87 544 IPR005722 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre05g2404 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 432 IPR027417 -
Cre05g2404 550 CDD ATP-synt_F1_beta_N 86 159 - -
Cre05g2404 550 Hamap ATP synthase subunit beta [atpB]. 85 544 IPR005722 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre05g2404 550 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 158 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Cre05g2404 550 Gene3D - 429 550 IPR024034 -
Cre05g2404 550 Pfam ATP synthase F1 beta subunit 1 48 IPR020971 GO:0005524(InterPro)|GO:0006754(InterPro)|GO:0016887(InterPro)|GO:0045261(InterPro)
Cre05g2404 550 Pfam ATP synthase alpha/beta family, beta-barrel domain 90 156 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Cre05g2404 550 CDD F1-ATPase_beta_CD 160 431 - -
Cre05g2404 550 Pfam C-terminal domain of V and A type ATP synthase 433 509 - -
Cre05g2404 550 PANTHER ATP SYNTHASE 72 547 IPR050053 GO:0005753(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)
Cre05g2404 550 ProSitePatterns ATP synthase alpha and beta subunits signature. 417 426 IPR020003 GO:0005524(InterPro)
Cre05g2404 550 Gene3D - 76 158 - -
Cre05g2404 550 SMART AAA_5 225 489 IPR003593 GO:0016887(InterPro)
Cre05g2404 550 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 429 545 - -
Cre05g2404 550 Gene3D - 159 428 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2404 K02133 - - csv:101213164 949.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2404 Cre-Chr5:35535442 Cre07g0842 Cre-Chr7:6959204 4.70E-134 dispersed
Cre09g0797 Cre-Chr9:7925150 Cre05g2404 Cre-Chr5:35535442 1.40E-32 transposed
Cre09g1344 Cre-Chr9:20585600 Cre05g2404 Cre-Chr5:35535442 1.60E-11 transposed
Cre05g2404 Cre-Chr5:35535442 Cre09g1925 Cre-Chr9:38024466 7.90E-291 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g390 . Blo16g00724 Bda01g01841 Bda11g00156 Bpe13g01042 . . . Cmo04g01546 Cmo18g00993 . Cma18g00985 Car04g01533 Car18g00906 Sed06g1923 Cpe09g00332 . Bhi07g01249 Tan04g0788 Cmetu03g1471 Lac13g0552 Hepe01g1147 . . Cla05g02261 Cam05g2430 Cec05g2447 Cco05g2493 Clacu05g2419 Cmu05g2286 Cre05g2404 Cone13ag0789 Cone19ag0792 Cone6ag0416 Cone9ag0439 Lsi04g00205 Csa05g02046 Chy10g01193 Cme10g00209 . Blo11g01023 . Bda11g00156 . Bpe02g02015 . Bma06g01100 . Cmo04g02190 Cmo15g00978 Cma04g02088 Cma15g00938 Car04g02027 Car15g00881 Cpe13g00384 . Bhi12g00867 . . . Hepe02g2675 . Lcy10g1453 Cla01g00589 Cam01g0615 Cec01g0606 Cco01g0631 Clacu01g0607 Cmu01g0580 Cre09g1925 Lsi09g00638 . Chy09g00876 Cme09g01409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000576 6 4 5 5 3 4 4 3 3 2 3 2 4 3 3 7 4 5 2 4 2 0 2 2 3 3 3 6 3 2 102