Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2406 ATGGGGAAAGCGGATAAAGAGCGGCTCATTCGAACTCTCAATTCGCATCTGAACACCATCCATGAAACCTTTCAGATGTTGGATCAAAACCCATCGTCTTCCCTCGAAAAGGTGAGCTGGGAGGATGTTCTAAAAATGGGCGACCAAGTCTACAAGCAGGCGACTGTTGCTGGAATGGTGTGGACTGGAGAAAGACTAGAAGTTAAAGCAATTGAGGAAAATATGGCATCTTATTTCAATATGCTGCAGGGTTTCCTGCTGGTTTCCCATGGGAGTAAAGTGGGCGCTGGCCCTACTTTGTCTTCTGTTATCCATGCATCTGTGAAGCAAGTAATTGATTCCAGTTTTAAGTTATGGAAGGAATCCGTCTCTTTATATGGACCACGGAATAATGAGGATCAAAACCAAGTAGTTCCACTATTGGTTGGGGCGGTTTGGGAAGCTTGCTCTGCTCTTAAAAAAGCTCCTTCCACAAATATAACTGCGATTGGCCGAGCAATAACCCAGGTAGCTGTATCAGTGAAGGATGTCCTTCGAGAAATGAAGGAGCTTAAACAAGGTTCCTCCGACTTGGACGAAGCTCCTGAAGAACCTTCTAACAGAGTTGAAGGCGATTTGCAAGATGAGGGCAATACAAACGATGATGCTGATATAGGTAACGATTTGTCAGCTGAAGAGATGAGAGTTGCTCAATCTGCCATTAGTGTTGTATCTTCAATTCTTCTAGTTATAAAGGAACTCATTCGCTCTATCACAAGTTTGCTTAAGCTGGAAAATGTAAACAAGGAAAGTAACTTAGCGTCCTTGGAGAATCTATTGAAGCTATGCCAAGGAATTGGAGTGCAGGTTGACGAGCTTGGAGCTTGTCTTTACCCCCCACAAGAGGCCGCTGCCATTAAAGTAGCTTCTGAGAAGATCTCTAGCCTTCTTGACAACATGCAGGGAGAGTTGGGAAGTCTTAATGGTAATTCGGAAGCCTTTCTTCAGGCAGGCAACAATCTCCGAAATTCGTTGAAGCAGCTCGAGATTGAACTAGGTGACTTCACATCTACTGATGTAGAAAGTAGAATGCAGAATGTAACTTTAAGCGACTAA 1095 43.84 MGKADKERLIRTLNSHLNTIHETFQMLDQNPSSSLEKVSWEDVLKMGDQVYKQATVAGMVWTGERLEVKAIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQVIDSSFKLWKESVSLYGPRNNEDQNQVVPLLVGAVWEACSALKKAPSTNITAIGRAITQVAVSVKDVLREMKELKQGSSDLDEAPEEPSNRVEGDLQDEGNTNDDADIGNDLSAEEMRVAQSAISVVSSILLVIKELIRSITSLLKLENVNKESNLASLENLLKLCQGIGVQVDELGACLYPPQEAAAIKVASEKISSLLDNMQGELGSLNGNSEAFLQAGNNLRNSLKQLEIELGDFTSTDVESRMQNVTLSD 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35553174 35555678 + CrPI670011_05g024060.1 Cre05g2406 498919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2406 364 PANTHER CYCLIN D1-BINDING PROTEIN 1 3 351 IPR026907 GO:0005634(PANTHER)
Cre05g2406 364 Gene3D I/LWEQ domain 155 354 - -
Cre05g2406 364 MobiDBLite consensus disorder prediction 185 217 - -
Cre05g2406 364 Pfam Grap2 and cyclin-D-interacting, N-terminal 42 186 IPR049317 -
Cre05g2406 364 MobiDBLite consensus disorder prediction 185 208 - -
Cre05g2406 364 Pfam Grap2 and cyclin-D-interacting, C-terminal 214 314 IPR049318 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2406 K21626 - - csv:101213885 617.461
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012569 0 1 1 1 1 1 2 1 1 1 1 1 3 1 1 0 1 2 1 1 1 0 1 1 1 0 0 1 1 1 29