Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2419 ATGACTTCCTGCGGCGGCGGCGGCGGCGAGGTTGAAGTCAAGGGAGTGTTTACAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTCGCCATCTTCTCTCCTAAGTCTGCACAAATTTTGACGACCCTTCCCGGTCACAACGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGCCAAGCATTTGAAGTGTCATTATTTGCTATCTGGTGACTCTGATGGTGTCATTCATTTATGGGAGTTGTCTTTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCACATGTAATTTCTGAAACGGTGGCAATTGTTGCATCTGCTTCTTCAGATGGTTCAATTTGTGTTTGGGAGGTCGCTTTTCCGTCTACCAAAGAAGGTGATTGTACATTGTTGTTGCTGGACTCGCTCATGGTTGGTTCCAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCAGTCATATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGCACATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGAAAAAATGGAGAAGCAAACAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAAATGGTTCTTCATGGTTCTTCAACTGACATAAATGGAGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCTGGACCATTAACTTACCAGGTATCATTAGAGTCACTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGCTCCGTGCTATCAATCTGAAAGCATCCTATCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTCTACGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTACGGTGGGTCTTTTCATCTCTGGAAAAATGTTGGTATCGGTTCAGATAACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTGATAGATATTTCATGGGCCAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTGCTCCCTGGAAAAATGTCAATTCTCTCGAAGGAGGTTCTTGGCATGAAATTGCTCGACCTCAGGTTCATGGTCATGATATTAATTGTGTCACCATAATAAAAGGGAAGGGGAACCATCGCTTTGTCAGCGGAGCCGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTATTTGAAGACATTGAGTCATGCCACACTGGAGAATGTTGTGGCCACTGAAGATCACCTTGTGGATGTTCAGATCTTGGGTGCTAATATGTCGGCGCTTGGCCTTTCACAGAAACCTATTTATGTTTACTGTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTTGAAACCATTCCTGATGCAGTTCCTGTCGTTCTTACTGAACCCCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATCACAAGGGGAAGCTTGTTGCGTCATCCTGTAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAAATGGAGTTCTCCCATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTCAAAATCCAGAGAACAGGCTCGGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGTCAAGATATGGGCTGTGACAGCTGAATCTTCAGTTAAGCAGCTAACAACTCTCTCACAGTTCAAATCTAGTGTCACTGCTTTATCATGGGTCGGTCTTGATCCCAAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTTCTTGAGTTTTGGAGTTTATCTATCAAAAGAACAGATAATGTCTGCTCAAATGTAGTTGCTTCAGTCGCTTTACGCCTCAATCCATTTGATTGTCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGGAACCGGAGAAGAGTGGTGAAGAGTGCAGGAAGCTGCAACTTGCATCTTGTGGCGCTGATCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2526 43.71 MTSCGGGGGEVEVKGVFTGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFRAKHLKCHYLLSGDSDGVIHLWELSFLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSICVWEVAFPSTKEGDCTLLLLDSLMVGSKSMVALSLAELPGNVSHMVLAMGGLDNKIHLYCGKRTGEFVKACELKAHTDWIRSLDFSLPMGKNGEANSIMLVSSSQDRGIRIWKMVLHGSSTDINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGAPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGIGSDNWKPQKVPSGHFAAVIDISWARSGDYIISVSHDQTTRIFAPWKNVNSLEGGSWHEIARPQVHGHDINCVTIIKGKGNHRFVSGAEEKVARVFEAPLSYLKTLSHATLENVVATEDHLVDVQILGANMSALGLSQKPIYVYCADKTPDRSGNEGIDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSHDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTAESSVKQLTTLSQFKSSVTALSWVGLDPKSNGLLAVGMENGLLEFWSLSIKRTDNVCSNVVASVALRLNPFDCHVSSVNRLAWKEPEKSGEECRKLQLASCGADHCVRVFEVNVSV 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35651941 35658025 - CrPI670011_05g024190.1 Cre05g2419 498932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2419 841 SMART WD40_4 360 399 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 684 723 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 789 836 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 458 499 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 588 632 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 109 152 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 52 102 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 635 674 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 299 350 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 407 446 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 729 772 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SMART WD40_4 214 261 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 SUPERFAMILY WD40 repeat-like 687 837 IPR036322 GO:0005515(InterPro)
Cre05g2419 841 PANTHER ELONGATOR COMPLEX PROTEIN 2 17 839 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 688 722 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 408 445 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 306 349 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 637 673 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 55 101 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 220 260 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 Pfam WD domain, G-beta repeat 118 151 IPR001680 GO:0005515(InterPro)
Cre05g2419 841 FunFam Elongator acetyltransferase complex subunit 2 369 681 - -
Cre05g2419 841 SUPERFAMILY WD40 repeat-like 194 729 IPR036322 GO:0005515(InterPro)
Cre05g2419 841 Gene3D - 683 840 IPR015943 GO:0005515(InterPro)
Cre05g2419 841 PRINTS G protein beta WD-40 repeat signature 710 724 IPR020472 -
Cre05g2419 841 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Cre05g2419 841 PRINTS G protein beta WD-40 repeat signature 139 153 IPR020472 -
Cre05g2419 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 722 - -
Cre05g2419 841 Gene3D - 27 292 IPR015943 GO:0005515(InterPro)
Cre05g2419 841 Gene3D - 580 682 IPR015943 GO:0005515(InterPro)
Cre05g2419 841 SUPERFAMILY WD40 repeat-like 36 354 IPR036322 GO:0005515(InterPro)
Cre05g2419 841 Gene3D - 293 403 IPR015943 GO:0005515(InterPro)
Cre05g2419 841 Gene3D - 404 555 IPR015943 GO:0005515(InterPro)
Cre05g2419 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 732 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2419 K11374 - - csv:101209018 1598.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1618 Cre-Chr1:29257836 Cre05g2419 Cre-Chr5:35651941 5.50E-192 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30