Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2421 ATGGCAAAATTTCCTTCGATTTCCCTGCTTTTTCTCCTCTGCAACTTATGCCTTTCCAGGGCTTCTTTGAATGAAGAGGGCAATGCCCTTTTATCATTCAAACAATCCATTACTGAAGACCCAGAGGGGTGTTTCAGCAACTGGAATTCTTCCGATGAAACCCCATGTGGTTGGAATGGAGTTACATGCAAGGATCTAAGAGTTGTTTCTCTTAGTATTCCTAAGAAGAAACTTAATGGGGTTATTCCTTCTTCTCTGGGGTTTCTGTCTGAGCTTCGTCATGTGAATCTCAGGAGTAATAAGCTCCATGGAACCTTGCCAATGGAGCTTTTTCAAGCTAATGGAATTCAAAGTTTGGTGCTTTATGGAAATTCCTTCACTGGGTCTCTTCCAAATGAGATTGGTAAGCTAAAAAACCTTCAAATCTTGGATTTGTCTCAGAATTTCTTTAATGGGTCCTTGCCTGTTTCCTTAATGCAATGCACAAGGTTGAGAGTTCTTGATCTCGGTCAGAACAATTTTTCCAATTCTCTGCCTACTGGGTTTGGTTCCAGTTTGAATTTCTTGGAAACATTGGATCTTTCTTACAATAAGTTTAATGGTTCAATTCCAATGGATATCGGTAATTTGTCTAGCTTACAAGGCACTGTTGATTTCTCACATAATTTGTTTTCTGGCTCTATCCCAGCCAGCCTGGGAAACCTTCCTGAAAAAGTTTATATTGATCTTACTTATAATAATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGGCCAACTGCTTTTATTGGGAATCCTGGCCTTTGTGGGCCGCCGTTGAAGAACCCATGTTCTTCTGAAACTCCGGGCGCAAGTTCCCCGTCCTCGTTCCCATTTTTCCCAGACAATTATCCACCTGGGAGTTCTGAGGGTAATGGTAATAAGTATGACAAAGGAGGGCTGAGTAAGAGCACTTTGGTTGCAATAATCATCGGTGACATTGTCGGTATTTGCCTGATCGGGTTGCTGTTTTCATATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAATTATGGATTTGAGAAGGGTGGAAATGGAAGAAAAGATTGTCTCTGCTTTCAAAAGGGTGAATCCGAGAACGTTTCGGAGCATATCGAGCAGTTTGATTTGGTACCTCTGGATTCACAAGTGACGTTTGATCTCGACGAACTTCTCAAGGCATCGGCATTTGTTTTGGGAAAAAGTGGTATCGGAATCGTGTATAAAGTTGTGCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTAAAAGAATTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCGAATGTGGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTATTTATGATTACATACCAAATGGGAGCCTTGCATCTGCTATTCATGGAAAGCCCGGAACAACATCGTTTACACCGTTAGCGTGGTCTGTTCGGTTTAAAATCATGAAAGGCATTGCGAAAGGGTTGGTTTACTTGCACGAGTTTAGCCCGAAAAAGTATGTTCATGGTAATTTGAAAACAAACAACATACTTCTTGGACACGACATGACACCGCATATTTCTAATTTCGGGCTTGCCCGCCTTGTTAACATTGCTGGAGGATCGCCAACTGTGCGATCGAGTCATATAGCAGAGGAAAAACCACAAGAGAAACAACTAAAGTCTGCCACCTCTGAAGCTAGTACATTCAGTTCTAGCATGAGTACTTACTACCAAGCACCAGAAGCGTTCAAAGTCGTGAAGCCATCACAGAAATGGGACGTTTACTCGTATGGTGTGATATTACTTGAAATGATCACCGGAAGGTTGCCTATAGTTCAGGTGGGAGCTTCGGAAATGGATCTTGTTCAGTGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCAGATGTGATAGACCCATCTTTGGCTCCGGACGACGATGCAGACGAGGAGATTATTGCGGTTTTGAAGATAGCATTAGCTTGTGTTCAAAATAGTCCAGAAAGAAGACCTGCAATGAGACATGTTTGTGATGGATTGAGCAGGTTGGGTGTCACTCCAAACTGA 2154 42.11 MAKFPSISLLFLLCNLCLSRASLNEEGNALLSFKQSITEDPEGCFSNWNSSDETPCGWNGVTCKDLRVVSLSIPKKKLNGVIPSSLGFLSELRHVNLRSNKLHGTLPMELFQANGIQSLVLYGNSFTGSLPNEIGKLKNLQILDLSQNFFNGSLPVSLMQCTRLRVLDLGQNNFSNSLPTGFGSSLNFLETLDLSYNKFNGSIPMDIGNLSSLQGTVDFSHNLFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNGNKYDKGGLSKSTLVAIIIGDIVGICLIGLLFSYCYSRFCTHRNGKKADQSNYGFEKGGNGRKDCLCFQKGESENVSEHIEQFDLVPLDSQVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGSLASAIHGKPGTTSFTPLAWSVRFKIMKGIAKGLVYLHEFSPKKYVHGNLKTNNILLGHDMTPHISNFGLARLVNIAGGSPTVRSSHIAEEKPQEKQLKSATSEASTFSSSMSTYYQAPEAFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIAVLKIALACVQNSPERRPAMRHVCDGLSRLGVTPN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35664947 35667175 - CrPI670011_05g024210.1 Cre05g2421 498934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2421 717 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Cre05g2421 717 SUPERFAMILY Protein kinase-like (PK-like) 415 707 IPR011009 -
Cre05g2421 717 SUPERFAMILY L domain-like 25 278 - -
Cre05g2421 717 MobiDBLite consensus disorder prediction 278 313 - -
Cre05g2421 717 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Cre05g2421 717 Gene3D Transferase(Phosphotransferase) domain 1 486 715 - -
Cre05g2421 717 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cre05g2421 717 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2421 717 CDD STKc_IRAK 416 712 - -
Cre05g2421 717 FunFam Leucine-rich repeat protein kinase family protein 486 715 - -
Cre05g2421 717 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cre05g2421 717 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Cre05g2421 717 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Cre05g2421 717 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cre05g2421 717 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Cre05g2421 717 Pfam Protein kinase domain 416 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2421 717 Gene3D Ribonuclease Inhibitor 180 282 IPR032675 -
Cre05g2421 717 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Cre05g2421 717 PANTHER OS05G0588300 PROTEIN 178 712 IPR050994 -
Cre05g2421 717 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 184 - -
Cre05g2421 717 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2421 Cre-Chr5:35664947 Cre10g2058 Cre-Chr10:35281270 1.90E-63 dispersed
Cre02g1130 Cre-Chr2:10164067 Cre05g2421 Cre-Chr5:35664947 5.50E-77 transposed
Cre04g0104 Cre-Chr4:2399386 Cre05g2421 Cre-Chr5:35664947 2.00E-75 transposed
Cre05g1202 Cre-Chr5:11662292 Cre05g2421 Cre-Chr5:35664947 2.00E-69 transposed
Cre11g1808 Cre-Chr11:29670376 Cre05g2421 Cre-Chr5:35664947 8.50E-112 transposed
Cre11g1216 Cre-Chr11:10204964 Cre05g2421 Cre-Chr5:35664947 2.30E-132 wgd
Cre05g2421 Cre-Chr5:35664947 Cre09g1938 Cre-Chr9:38211619 9.60E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64170 PF00069 Pkinase 1.20E-29 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2421 - - - 0.0