Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2429 ATGGCTTCCAGAGAAGGGAGACGCCATCATCATCATCACCATCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGCGAGTTCCCGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCGTCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCCGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTGGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCCGCCATGCTGGCAGAAAGGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGAAGAAGGCAAAATTTGTGTGTCACGCCCTTTTTTGGTGCTCCAGAGCAAAGTGTGCTTGGAGCTGAGGCATAAGTGGTTTTTGAGAGCGGTTTTCTTAAGGTTGGGGTTGACTGAAATTCATGTGTTTTTAGACTTGTTTTCTTTTGTTCAAATGCTTCAAAGTACTTTAGATCTTTATTTGGAGGTTGTTAATCAAGTGGTTGATATTCGAAATCTCATGAACTCTTTCCGTTCGGTAACTTTTCAGCACGTTCCTAGGTACCATAATCAGGACGCACATTCTTTGGCCTGTGAAGGGTTGTTGGGATTGAACCAGCTAAGGCTCAACTCTTTCCCATCTGATTTAGAGGGATTGTTGAGATCTGATCTTTTCTTTTTATGTAATCTTGTTGCTTTGTATTATGCCTTGTTGTGGTTTGTGTAA 1617 45.7 MASREGRRHHHHHHHQNLVPLAALISKERVPGNPSSTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGEEGKICVSRPFLVLQSKVCLELRHKWFLRAVFLRLGLTEIHVFLDLFSFVQMLQSTLDLYLEVVNQVVDIRNLMNSFRSVTFQHVPRYHNQDAHSLACEGLLGLNQLRLNSFPSDLEGLLRSDLFFLCNLVALYYALLWFV 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35714203 35719983 + CrPI670011_05g024290.1 Cre05g2429 498942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2429 538 Gene3D - 416 498 IPR036397 GO:0003676(InterPro)
Cre05g2429 538 SUPERFAMILY PP2C-like 35 269 IPR036457 -
Cre05g2429 538 PANTHER PROTEIN PHOSPHATASE 2 268 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre05g2429 538 SMART PP2C_4 11 267 IPR001932 -
Cre05g2429 538 Pfam Reverse transcriptase-like 430 494 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cre05g2429 538 Gene3D - 1 276 IPR036457 -
Cre05g2429 538 ProSiteProfiles PPM-type phosphatase domain profile. 24 269 IPR001932 -
Cre05g2429 538 Pfam Protein phosphatase 2C 33 254 IPR001932 -
Cre05g2429 538 SMART PP2C_SIG_2 14 269 IPR001932 -
Cre05g2429 538 FunFam probable protein phosphatase 2C 5 20 274 - -
Cre05g2429 538 CDD PP2Cc 31 269 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1017 Cre-Chr2:7833732 Cre05g2429 Cre-Chr5:35714203 2.40E-09 dispersed
Cre03g2019 Cre-Chr3:37181500 Cre05g2429 Cre-Chr5:35714203 3.20E-154 dispersed
Cre05g2166 Cre-Chr5:33427449 Cre05g2429 Cre-Chr5:35714203 7.10E-130 dispersed
Cre05g2429 Cre-Chr5:35714203 Cre05g0683 Cre-Chr5:6004867 9.30E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2429 - - - 0.0