Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2445 | ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA | 615 | 54.15 | MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35851156 | 35852723 | + | CrPI670011_05g024450.1 | Cre05g2445 | 498958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2445 | 204 | MobiDBLite | consensus disorder prediction | 151 | 186 | - | - | |
Cre05g2445 | 204 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 162 | - | GO:0010468(PANTHER) | |
Cre05g2445 | 204 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Cre05g2445 | 204 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1345 | Cre-Chr5:15126862 | Cre05g2445 | Cre-Chr5:35851156 | 1.10E-52 | dispersed | |
Cre05g2235 | Cre-Chr5:33959300 | Cre05g2445 | Cre-Chr5:35851156 | 9.80E-37 | dispersed | |
Cre05g2445 | Cre-Chr5:35851156 | Cre06g2350 | Cre-Chr6:31443051 | 7.50E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53769 | PF03195 | LOB | 5.90E-23 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2445 | - | - | - | 0.0 |