Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2446 ATGGGGATGAAGAAGGCGGCCACATTGTTGGATGATCTGTTACAGAGCGCTGGAGGTTGTGGGGTGATTGATGGAGGTTTCGCCACGCAGCTTGAGAAACACGGCGCTATCATTAACGATCCACTATGGAGTGCTGTTTGCCTCATTAATGATCCTGACCTAATCAAGAAGGTTCATTTGGAGTACTTGGAGGCTGGAGCAGATATTTTGGTTTCTTCATCTTACCAGGCGACCATTCCTGGGTTTATATCAAAGGGGCTGTCTGTGGAAGAAGGGGAGTTGCTCTTAGAAAAGAGTGTTAAATTGGCCATCGAAGCTCGTGATAGTTTCTGGGATTCTGTGAAGAGTATCCCAGGGCATAAGTACAATAGGGCTTTGGTTGCAGCATCCATTGGAAGCTATGGTGCCTATCTTGCTGATGGCTCAGAGTATAGTGGGCATTATGGGCCAGATGTGAATTTGGATAAGCTGAAGGATTTTCATCGACGCAGATTGCAGATTCTTGTTGATGCAAGCCCAGATTTGCTTGCATTTGAGACTATTCCCAATAAACTTGAAGCCCAGGCATGTGTGGAGTTGCTCGAAGAAGAAAACATCCAAATTCCATCTTGGATCTGCTTTAGCTCCGTAGATGGTGAGAATGCACCATCTGGAGAGAGCTTCAAGAAGTGCCTCCATGCGATTAATAAAAGTGACAAAGTAAATGCGGTTGGCATAAACTGTACACCTCCTCATTTTATTGAAGCTCTGATTACAAAGTTCAAAGAGTTAACAAACAAGCACATTGTTGTCTATCCCAATAGTGGGGAGGTATGGGATGGCAGATCCAAGAAATGGCTGTTCAAGATGGCGCGATTTGGGAGCAACATTCATTGGAGGCTGTTGTCGTACGACACCATCTACCATCCGTTCTATATCAAAGGTTTTGAAAGAAAGCTCTCATTAGTGACAATTGATGAGTTGACTGTCTGTAGTTGGATGGGATTGGTGACTGAACGGAAAGATTATACTAAAGCGAGGCAAGTTGTTTCTGGTTTTTTGAATTCAATGACGACAAGGAAAAGTGTGGAGAAAACAGCAGAGGGAGGCAAGACTGCCAGAGCCTGCGATAGCTGTATTAGCAAGCGGGCTCGGTGGTACTGTGCTGCCGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTCGGTCCACTCCGCCAACTCCTTGGCTCGTAGGCACGAGCGAGTTCGTCTTCAAACTGCCTCTTTCAGACCCTCTTCAGACAACTCTGCTGCCTCATGGCACCAGGGCTTCACCAAAAAGCCACGGTCGCCTCGAATGGGAAAGACTGCTCCAGCAAGGAAGCCATTTCCTCAGGTACCAGAGGTGAGTGCTAAAGAAGAAACTGAAGATCAAGAACAGCTTCTCCTTCATAGAGTTCCTGTATTGGGAGCCGATTCAAAAGATGGTAATTTGGCTAGTTTTGTTGGGGAAAAAGAAAGCTCAAATGGCTATCTCTCATACGATATGGATCCTGCTGAATTTGCAGCTGATGTTGAGAGTTTGTTGGGGAACTCGCTTGATAATGAGTGCTTTGATATGGAAGAACTGGGGCTGGCGGCTTCCAAAGACCACTCAATGACAAACGATGATCATTCTTTAAACAGCTGCGAACTTATTAAGATCGAAGCAGATGAGGTAGAGGAATTAACTCCAATGCTTGGCACAGAAGCCGATACAATGAGGGAGCCATTTGAGCTGAACTTTATGAACTTCAGCAGCAATCCGACAACGTGCAGTGAGGAAGACAAGGTGATGATGGAAGTCATGGCAGCAGTGAAGAACGGTGAAGTTGAGATGGAAGAGACGAAGATTGTTAAAAACAAAAAGAAAATATCGTTGAGTTTGGATAGTGAAGCAGTGATTATAGCTTGGGGGAGCAGAGGAACTCCATGGACATCCGGTGATCGACCAAATCTCGACCTCGATTATTACTGGCCGGACTACATGGGTGTGTGTGAGAGTGATTATTACTATCAAACTTACGGGGAGTTTGGCGGCGGAATTGCCCGACAAGCAGTGGCTGGAGTCGAAGGAGAGAGAGAAGCACGAGTATCGAGATACAGAGAGAAGAGAAGGACGAGATTATTTGCAAAGAAAATAAGATATGAAGTTCGAAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGGTTTGTGAAGAGATCGTCTTGCTTTGCGCCACCACCTTTGCCTCTGTTTAATTAA 2250 45.47 MGMKKAATLLDDLLQSAGGCGVIDGGFATQLEKHGAIINDPLWSAVCLINDPDLIKKVHLEYLEAGADILVSSSYQATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKSIPGHKYNRALVAASIGSYGAYLADGSEYSGHYGPDVNLDKLKDFHRRRLQILVDASPDLLAFETIPNKLEAQACVELLEEENIQIPSWICFSSVDGENAPSGESFKKCLHAINKSDKVNAVGINCTPPHFIEALITKFKELTNKHIVVYPNSGEVWDGRSKKWLFKMARFGSNIHWRLLSYDTIYHPFYIKGFERKLSLVTIDELTVCSWMGLVTERKDYTKARQVVSGFLNSMTTRKSVEKTAEGGKTARACDSCISKRARWYCAADDAFLCQACDASVHSANSLARRHERVRLQTASFRPSSDNSAASWHQGFTKKPRSPRMGKTAPARKPFPQVPEVSAKEETEDQEQLLLHRVPVLGADSKDGNLASFVGEKESSNGYLSYDMDPAEFAADVESLLGNSLDNECFDMEELGLAASKDHSMTNDDHSLNSCELIKIEADEVEELTPMLGTEADTMREPFELNFMNFSSNPTTCSEEDKVMMEVMAAVKNGEVEMEETKIVKNKKKISLSLDSEAVIIAWGSRGTPWTSGDRPNLDLDYYWPDYMGVCESDYYYQTYGEFGGGIARQAVAGVEGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSCFAPPPLPLFN 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35854958 35860374 - CrPI670011_05g024460.1 Cre05g2446 498959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2446 749 ProSiteProfiles Homocysteine-binding domain profile. 9 313 IPR003726 -
Cre05g2446 749 SMART bboxneu5 364 411 IPR000315 GO:0008270(InterPro)
Cre05g2446 749 ProSiteProfiles Zinc finger B-box type profile. 364 411 IPR000315 GO:0008270(InterPro)
Cre05g2446 749 Pfam B-box zinc finger 366 409 IPR000315 GO:0008270(InterPro)
Cre05g2446 749 PANTHER ZGC:172121 13 283 IPR051486 GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER)
Cre05g2446 749 Gene3D - 10 297 IPR036589 -
Cre05g2446 749 ProSiteProfiles CCT domain profile. 694 736 IPR010402 GO:0005515(InterPro)
Cre05g2446 749 SUPERFAMILY Homocysteine S-methyltransferase 17 280 IPR036589 -
Cre05g2446 749 Pfam Homocysteine S-methyltransferase 22 285 IPR003726 -
Cre05g2446 749 MobiDBLite consensus disorder prediction 414 430 - -
Cre05g2446 749 CDD Bbox1_BBX-like 368 411 IPR049808 -
Cre05g2446 749 MobiDBLite consensus disorder prediction 414 460 - -
Cre05g2446 749 FunFam Homocysteine S-methyltransferase 10 293 - -
Cre05g2446 749 Pfam CCT motif 694 736 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2446 K00547 - - csv:101212689 756.133
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2446 Cre-Chr5:35854958 Cre06g1388 Cre-Chr6:8060181 2.80E-89 dispersed
Cre03g0356 Cre-Chr3:1967553 Cre05g2446 Cre-Chr5:35854958 1.70E-15 transposed
Cre05g2446 Cre-Chr5:35854958 Cre06g2352 Cre-Chr6:31448927 1.00E-59 wgd
Cre05g2446 Cre-Chr5:35854958 Cre08g0498 Cre-Chr8:17243131 3.00E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g306 . . . . . . Bma14g01711 . Cmo04g01579 Cmo18g01031 . Cma18g01021 Car04g01560 Car18g00940 Sed06g1889 Cpe09g00302 Cpe01g01343 Bhi07g01323 Tan04g0851 Cmetu10g0078 Lac13g0497 Hepe01g1191 . . Cla05g02299 Cam05g2472 Cec05g2494 Cco05g2537 Clacu05g2467 Cmu05g2329 Cre05g2446 Cone13ag0830 Cone19ag0835 . . Lsi04g00254 Csa05g02612 Chy10g01147 Cme10g00260 . Blo11g00847 Bda07g01538 . Bpe11g01702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53770 PF02574 S-methyl_trans 4.40E-61 No_clan Cre TF