Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2454 ATGAAGATTTTTGTCAAGACTCTCAAGGGCTCGCACTTCGAAATCGAAGTTCAGCCTGCAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCACAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTCCATCGGGTGGGACATCTTCTACCACACAAGCTGCGCCAGTATCGAAGGCACCACAGAGCACTGCCCCTGCGCATGCTGCCACTCCAGTGTCAACCTCTGAAGTTCCTCTACCAACTTCAGCACCGCCTGCTAATGTTACTGATTCTTCTCCTCCCGCTCCCGCGCCGGCTCCTGCTCCTGCTCCCGCTCCCGCTGCAGCCCCAGCAACCACTGTTTTGCCAGAATCGGATGTCTACAGCCAAGCAGCCTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTATCCGACAGATTCTTGACATGGGTGAAGGCGTTTGGGATAGGGACACTGTTGTTCGAGCTCTTCGTGCTGCTTACAATAATCCGGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCGTCGACTGTGCAAGCAACCAACCCTTCTGCTCAACCTGCACAGCCAGCCCAACCTGCATCTGTGCCATCAACTGGCCCAAATGCCAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAACATAGCTTCTGGAGCTGCTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGGCAGCTTGCTGAGGCTATGCCACAGGCTATAACTGTAACCCCAGAGGAGCGGGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACAGAGGTCTAGTTGTGGAGGTTTTCTTCGCGTGCAACAAAAACGAAGAAATGGCTGCCAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAG 1212 48.51 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENKVAENSFIVIMLTKNKSPSGGTSSTTQAAPVSKAPQSTAPAHAATPVSTSEVPLPTSAPPANVTDSSPPAPAPAPAPAPAPAAAPATTVLPESDVYSQAASNLVAGSNLEETIRQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPPARVPSTVQATNPSAQPAQPAQPASVPSTGPNANPLDLFPQGVPNIASGAAGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35946511 35954329 + CrPI670011_05g024540.1 Cre05g2454 498967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2454 403 CDD Ubl_Rad23 1 74 - -
Cre05g2454 403 FunFam UV excision repair protein RAD23 1 80 - -
Cre05g2454 403 Pfam UBA/TS-N domain 172 209 IPR015940 -
Cre05g2454 403 Pfam UBA/TS-N domain 356 391 IPR015940 -
Cre05g2454 403 Gene3D - 1 80 - -
Cre05g2454 403 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 392 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Cre05g2454 403 FunFam UV excision repair protein RAD23 homolog 164 214 - -
Cre05g2454 403 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515(InterPro)
Cre05g2454 403 NCBIfam UV excision repair protein Rad23 1 399 IPR004806 GO:0006289(InterPro)
Cre05g2454 403 FunFam UV excision repair protein RAD23 B 267 332 - -
Cre05g2454 403 SUPERFAMILY UBA-like 168 217 IPR009060 GO:0005515(InterPro)
Cre05g2454 403 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cre05g2454 403 SMART uba_6 171 211 IPR015940 -
Cre05g2454 403 SMART uba_6 356 393 IPR015940 -
Cre05g2454 403 FunFam UV excision repair protein RAD23 homolog 347 395 - -
Cre05g2454 403 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515(InterPro)
Cre05g2454 403 SMART CBM 274 317 IPR006636 -
Cre05g2454 403 MobiDBLite consensus disorder prediction 77 123 - -
Cre05g2454 403 Gene3D - 266 331 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cre05g2454 403 MobiDBLite consensus disorder prediction 77 148 - -
Cre05g2454 403 SUPERFAMILY UBA-like 336 398 IPR009060 GO:0005515(InterPro)
Cre05g2454 403 MobiDBLite consensus disorder prediction 225 255 - -
Cre05g2454 403 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Cre05g2454 403 SUPERFAMILY XPC-binding domain 272 337 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cre05g2454 403 MobiDBLite consensus disorder prediction 222 256 - -
Cre05g2454 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 169 212 IPR015940 -
Cre05g2454 403 SMART ubq_7 1 75 IPR000626 GO:0005515(InterPro)
Cre05g2454 403 Gene3D - 164 214 - -
Cre05g2454 403 PRINTS DNA repair protein Rad23 signature 350 366 IPR004806 GO:0006289(InterPro)
Cre05g2454 403 PRINTS DNA repair protein Rad23 signature 367 381 IPR004806 GO:0006289(InterPro)
Cre05g2454 403 PRINTS DNA repair protein Rad23 signature 382 397 IPR004806 GO:0006289(InterPro)
Cre05g2454 403 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289(InterPro)
Cre05g2454 403 MobiDBLite consensus disorder prediction 124 146 - -
Cre05g2454 403 Gene3D - 348 395 - -
Cre05g2454 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 394 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2454 K10839 - - csv:101220491 690.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2454 Cre-Chr5:35946511 Cre10g1606 Cre-Chr10:30176637 1.00E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41