Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2458 ATGGCTAACGATACTGCTCACCGGAAGCACCGCCGATCTGCTTCCGATGAAGACGATGAGAAATCTTCTAAGCGTCACAAACACCGTCACCATCGCCGCCACCACCGACATCGTCACAGCAGCAATAAGAACGAAGAAGAAAGCTGCCGGGACCAGGAGGATAGTGTTCCTCCTGTTGCTAATCGTAGATCTCGGCCGGAAGATGACGTCGAGGAAGGCGAAATTCTCGAAGAGGAAGAGTCTGGCGTTCGCGAGAACGAGAGCTCGATGAAGGAGGTGGATGTGGAATTTGGGAAATTTGAAGCTGATGAAATTTCCGGTAGAATTGACCAGCCCGCTATGGAGTGTCATGAGGTGGATGAATCATCTAAGGCTAATTTAATTGTGAAAGAGGGGGCAGGAAACAGTGCTCAAGATTGGAAGACCTCGAAAGTGGACAGTAAGTTCTATAATTTAGATAAGGAAAAAGGTGGCTATTATGCAAAAAAAGATACAGACAAGGAAAACATGATGCTCTATCAAACTGACTCTGGCTGTAAGCATGGCAACGATGGTAGCTTTTCCACGGGTGAAGTGGCTGGAATTAAATACAATAATCTTGAACGTTGTCAAGAGGGTCATAGTAAACGGGATTTTGGTCACGAATCTCTGAAGTTAGATGAGAGGCAGCACAAACGAATGTTATCTCCTTCTAAAGGGGGTATTAAGAAAATAAGCAACAATGGCAATGGAAAGGTGGCGACAGATGGAAGCACCTTGGGAAATGGGAAAAGGCCACAGTTAGAAAGGACTGAAGACAAGTCTCAGGATTTTACGTCATCGACATCTCAAGATCGATTAATTGACGCATCAGATTGTAGGAGTAGATCGAGGTCAAATTGTCATTCTAGGGGGCAATCTCAGTCTCGTGAATCAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATGATCATGGTTGGGATCACCCAATATTTGATGATAAAGGTAAAATTCACACCGACTTGGATGATGATTACACTGAATGTGCTAGGGGAGAGGGAAGGCATCGAAGCAGGGATACAAAGGACAGAGGGAGAAGTAAGATGGAGTTGGATAGGGACTGGTCCAAGGAAAATGAAATGGGAAAAAACAAAGATAAAGATAGGGGGATAGATAAGCCAAAGTATGATGACAGAGAGAGAGGTAGGAGTAAAGATAAAAGAAAGGAGATGGAACGAAACAGGAGCAGGGAGAGAGAGACGGATAGGGATAGGAGAAGGGAAAGGGATGCGGAAAGAGATAGGAGAATGAAGGAAAGAGGTAGGAGTAGGGAAAGAGAGGTGCAAAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGTAGGGAAAGAGAGGTAGAAAGGGATAGAAGAATGGAGAAGGAGAGAGGTTGGAGCAAGGAAAGAGAGGTGGACAGGGATAGAAGAGCAGAAAAGGAAAGATGTAGGAGCACTGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGAAAGGGAAGTAGATTGGGATGGGAGAAGGGATAGGGACAGGGATCGGAATGATGATAAGGTTGAATATAGTGATAGAAATAGAGACAAGGAAAGGGTGAGAGAGATGCAAAAGGACCGGTATAGGGACAAAGAATTTGATAGGGAGAGACAAGATGATAGAAACAAGAATAAATCCAGTGACATTTTAACTAGTAAGGACAAGTATGGGAATCTTGAACATGGCTATGTTAAAGGTTCTAAGCAGTCTAGGCATTATGATAATGAATTTGGTCTGGATGGGGGAAGAACTAATGCTGTCGAAAAGCAGGGTAGTTTTAAGAGAAATAATCGTGAAGAAGGTGAAGACAAGCTAATGAGTGATCACGATGGGGAGGAAGAGGATGGAGACAGCATGTCATTTCAATTAGCCGATGAAGAAGAGGAGGATCTTAACAGAATCAAGGAGGAGAGTAGAAGACGGAGGCAAGCAATCTTAGAAAAATACAAATGCCAGCAGTTAGAGAAACAAGTAGAGCCTTCTTTGAAGGAATCTGAGAAAGGTAAGGATTCTGCAAATGATTCTTCTCAATCAGAAGCTGCTGCTCATGCTATTCCAGAATTGGTTGATGGGGCGGTGGATGATAGTGTTACTGACTCATCTTTTGCTGTGGAGAAATCCCCACAACAAAATGGAGTAAATGCGACGGATAAAACTGCTGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCTGATGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGTGATGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGACGATGCGGATGGATATTATAACTACCGATTTGGTGAAGTGCTTGATGGTCGGTATGAAATTGCTGCTGCACATGGCAAAGGTGTTTTTTCAACCGTAGTCCGTGCAAAGGATCTCAAAGCTGGTCATGGCGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAACTGTGGTGTTCTCCACTGTGATATAAAGCCGGATAATATGCTGGTTAATGAGGGAAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAATCACCCCATACCTTGTTAGCCGGTTTTATCGTGCACCTGAAATTATTTTAGGGCTGTCATATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTCTCTACAGGGAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGACCTTTTCCGAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACAGTATCACAGGCATTGAATCATCCATTCATCACTGGCAATCTTCTTTATGATGACCTAAGCTTCTGGCACAATTATGGGATGATTGAATTCAGAAGGGGTCATATTGGTCAGGAGTGGCGGGTTCTTTCAGTCGAATGTACTGTTTCTATTGATGTCTGCTTCTGCTCTGAGAGAACCTTCCAGTGCTTAAGTGATTTAGAGGCACTCAGGAGAAGATGCATGTGTATTTATGACCATGATTTATTTTATCATGCAACCTACCACCACTGTCTGGTGGTTGGGAACAAGGATATGCTATCGTTTATGGAGGCACTTGCATTGGAGAGGTTAACCGCTGTGGCACCATGTGAAGTAGTGTTGCAGGCGAACTGCATATCATCCCCATTCTCTTGGCACTTTCAATTAGAGATGCATGAATACGGAAGGATGATCAGCATTGAGCAATCAACCCAAAAGCCTTCTGCAATTCATTCTAAGCGTTGGTTTGTGAGGGATTTATCAGTTATGAACACAATCGATGAGGTTCTCTGTTTTGTTGCTGGAGAGTCTTTCTATTGGGTGCTCACAATAATCATTTCTCATGAAGGAGGCAACATACAACTCCGTAGTTTTGACAATTTTCGTGGAAAAATAGGAAAATCCAACACTTTCGAGGAATATGGGTTTCATTGGAATTGCTCGTTGTATACTCTGATTTTGATATTGTCCTCTTTCCCTCCGAGAAAGGAGTTGTCGGAGTTTCCATACCAAAGATTTCTCAGGAACATGGGAAAGAAGCTGGATGCACTGCTGGGAAGAAGCTTCAAGACCACAAGGTTCAAAGCTCTTGTGAATCTGGCCATATCTCGCCTCGCTGTTCTTGCAAACCAGCGCCAAGTCAGATCTTCCCAGGCTCGTTCTGACGTAGTTCAGTTGCTGCAGCTTGGCCACCAAGAGAGAGCCCTCTTTCGGGTGGAGCAAGTGATTAAGGACCAGAAACTGCTGGATGCGTATGCGATAATAGAGAGTTATTGTGAGGTTGTACTGGAAAGAATCAAGCTACTTGAACATGAGAGAGAATGTCCAGAAGAACTTAAGGAGGCAATTTCAGGTTTGATTTTTGCATCTTCTAGATGTGGGGATTTCCCCGAGCTTATAGAAATTCGTTCAGTAATTACCAGTCGTTTTGGGAAGGAGTTTACTGCTCGTGCTATTGAGTTACGCAACAATTGTGCTGTTGGTCCAATGATAGTACAGAAGCTGTCAGCTAGGCCACCAAGCTTGGAGATCAAATTGAAGTTACTTAAACAAATTGCTTCTGAACATGGCATTACTTTGAAAGATTTGGAAGCTTATGAAGTTTCAACTGAGACGCAGGAGAAAGTTGTGGCAGAAGAGAAGAAGGATCAACCACAGCAGGAAACCAAAGTGGAAGGTGTTTTTCAGATTTTACCTGAAGATATAGAGAAAGACAATCGGTATGCTGATTCGATGAGAGGAAGAAAGAAGTACAAAGATGTGGCAGACGCTGCTCAGGCAGCATTCGAGTCAGCAGCTTATGCAGCAGCTGCAGCAAGAGCTGCTGTGGAACTCTCAAAATCTAAATCACTTGATCACGATGACCCGAGTAGTCTGAGTCCAAAACCAAGAAAATCCACTGAAACTCTTGAATCCAAGAACACTGAGATAGAATTGGAATCAGAAAACAAGGGAACACACAGTGGAAGTAGGTCTATAGGAGTGGAGGAGAGTGAAAATGGAACAGAATCGAAGCAGCCAGTGTCTTCTTCTAGTTCGGAAGCCGGGAATGCTAGTTTAAAGGAAAATGAGATTCCAATAGAAGCAATAATTGATCTTCTGGAGAAGGATTTGGTTTTTGACGAGAGTGATATTGATGCTGGGAGCAGTTCAACTCTTGAGGAGAGGAATTCGAGCTTCGAGTGTCGTGAGAAGATGGAATCAGAGTCTGCAGAGATCACAGCAAACAATGAGGAATCTGATAACATAAATACTGCACAAAATTTAAGCATAGAGAATAAGGCTGTTATAAGGACAATAGATGTCCGTGGGCACTGA 5406 42.97 MANDTAHRKHRRSASDEDDEKSSKRHKHRHHRRHHRHRHSSNKNEEESCRDQEDSVPPVANRRSRPEDDVEEGEILEEEESGVRENESSMKEVDVEFGKFEADEISGRIDQPAMECHEVDESSKANLIVKEGAGNSAQDWKTSKVDSKFYNLDKEKGGYYAKKDTDKENMMLYQTDSGCKHGNDGSFSTGEVAGIKYNNLERCQEGHSKRDFGHESLKLDERQHKRMLSPSKGGIKKISNNGNGKVATDGSTLGNGKRPQLERTEDKSQDFTSSTSQDRLIDASDCRSRSRSNCHSRGQSQSRESVEEEAESKSRHDHGWDHPIFDDKGKIHTDLDDDYTECARGEGRHRSRDTKDRGRSKMELDRDWSKENEMGKNKDKDRGIDKPKYDDRERGRSKDKRKEMERNRSRERETDRDRRRERDAERDRRMKERGRSREREVQRDRRVERERGWSREREVERDRRMEKERGWSKEREVDRDRRAEKERCRSTDREGNRDRRREREKDRSKEREVDWDGRRDRDRDRNDDKVEYSDRNRDKERVREMQKDRYRDKEFDRERQDDRNKNKSSDILTSKDKYGNLEHGYVKGSKQSRHYDNEFGLDGGRTNAVEKQGSFKRNNREEGEDKLMSDHDGEEEDGDSMSFQLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEPSLKESEKGKDSANDSSQSEAAAHAIPELVDGAVDDSVTDSSFAVEKSPQQNGVNATDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKGDGLQIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKAGHGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGNLLYDDLSFWHNYGMIEFRRGHIGQEWRVLSVECTVSIDVCFCSERTFQCLSDLEALRRRCMCIYDHDLFYHATYHHCLVVGNKDMLSFMEALALERLTAVAPCEVVLQANCISSPFSWHFQLEMHEYGRMISIEQSTQKPSAIHSKRWFVRDLSVMNTIDEVLCFVAGESFYWVLTIIISHEGGNIQLRSFDNFRGKIGKSNTFEEYGFHWNCSLYTLILILSSFPPRKELSEFPYQRFLRNMGKKLDALLGRSFKTTRFKALVNLAISRLAVLANQRQVRSSQARSDVVQLLQLGHQERALFRVEQVIKDQKLLDAYAIIESYCEVVLERIKLLEHERECPEELKEAISGLIFASSRCGDFPELIEIRSVITSRFGKEFTARAIELRNNCAVGPMIVQKLSARPPSLEIKLKLLKQIASEHGITLKDLEAYEVSTETQEKVVAEEKKDQPQQETKVEGVFQILPEDIEKDNRYADSMRGRKKYKDVADAAQAAFESAAYAAAAARAAVELSKSKSLDHDDPSSLSPKPRKSTETLESKNTEIELESENKGTHSGSRSIGVEESENGTESKQPVSSSSSEAGNASLKENEIPIEAIIDLLEKDLVFDESDIDAGSSSTLEERNSSFECREKMESESAEITANNEESDNINTAQNLSIENKAVIRTIDVRGH 1801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35971705 35990677 + CrPI670011_05g024580.1 Cre05g2458 498971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2458 1801 MobiDBLite consensus disorder prediction 234 258 - -
Cre05g2458 1801 Pfam Regulator of Vps4 activity in the MVB pathway 1391 1554 IPR005061 GO:0015031(InterPro)
Cre05g2458 1801 MobiDBLite consensus disorder prediction 40 70 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 1 24 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 203 703 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 25 39 - -
Cre05g2458 1801 CDD STKc_PRP4 811 1127 IPR044092 GO:0004674(InterPro)|GO:0006468(InterPro)|GO:0045292(InterPro)
Cre05g2458 1801 PANTHER DUAL SPECIFICITY PROTEIN KINASE 404 1130 IPR050494 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cre05g2458 1801 FunFam Serine/threonine-protein kinase PRP4 homolog 872 1128 - -
Cre05g2458 1801 SMART serkin_6 812 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2458 1801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2458 1801 FunFam serine/threonine-protein kinase PRP4 homolog 782 871 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 628 647 - -
Cre05g2458 1801 Coils Coil 646 666 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 1643 1681 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 648 695 - -
Cre05g2458 1801 Gene3D - 1378 1564 IPR042277 -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 1643 1719 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 301 600 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 1682 1715 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 725 755 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 1 95 - -
Cre05g2458 1801 SUPERFAMILY Protein kinase-like (PK-like) 799 1137 IPR011009 -
Cre05g2458 1801 FunFam Vacuolar protein sorting-associated protein IST1 1381 1563 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 725 740 - -
Cre05g2458 1801 MobiDBLite consensus disorder prediction 203 228 - -
Cre05g2458 1801 Pfam Protein kinase domain 816 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2458 1801 Gene3D Phosphorylase Kinase; domain 1 782 871 - -
Cre05g2458 1801 ProSiteProfiles Protein kinase domain profile. 812 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2458 1801 Gene3D Transferase(Phosphotransferase) domain 1 872 1128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2458 K08827 - - csv:101220260 1835.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2458 Cre-Chr5:35971705 Cre08g0483 Cre-Chr8:16587347 5.60E-67 dispersed
Cre03g1263 Cre-Chr3:18077562 Cre05g2458 Cre-Chr5:35971705 8.10E-38 transposed
Cre03g1853 Cre-Chr3:35467892 Cre05g2458 Cre-Chr5:35971705 1.80E-37 transposed
Cre04g1691 Cre-Chr4:35172571 Cre05g2458 Cre-Chr5:35971705 2.70E-36 transposed
Cre05g1340 Cre-Chr5:14747883 Cre05g2458 Cre-Chr5:35971705 2.40E-58 transposed
Cre08g0276 Cre-Chr8:7371493 Cre05g2458 Cre-Chr5:35971705 1.20E-34 transposed
Cre05g2458 Cre-Chr5:35971705 Cre08g0481 Cre-Chr8:16502478 3.70E-34 wgd
Cre05g2458 Cre-Chr5:35971705 Cre09g1986 Cre-Chr9:38825816 4.50E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64172 PF00069 Pkinase 4.90E-46 CL0016 Cre PK