Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2473 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTCAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCAAATTCCGGAGGCGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAGGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGACAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1074 50.93 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTESSEHTSSDGPVLEEFIPINKPSVNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSQIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATTAKARNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36111059 36112510 - CrPI670011_05g024730.1 Cre05g2473 498986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2473 357 Gene3D - 205 262 - -
Cre05g2473 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677(InterPro)
Cre05g2473 357 MobiDBLite consensus disorder prediction 191 211 - -
Cre05g2473 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cre05g2473 357 MobiDBLite consensus disorder prediction 159 211 - -
Cre05g2473 357 FunFam Myb family transcription factor 205 263 - -
Cre05g2473 357 MobiDBLite consensus disorder prediction 159 189 - -
Cre05g2473 357 MobiDBLite consensus disorder prediction 333 357 - -
Cre05g2473 357 Coils Coil 16 36 - -
Cre05g2473 357 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cre05g2473 357 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cre05g2473 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 326 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2473 357 MobiDBLite consensus disorder prediction 320 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2473 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1697 Cre-Chr5:28482006 Cre05g2473 Cre-Chr5:36111059 2.40E-12 dispersed
Cre05g2473 Cre-Chr5:36111059 Cre11g0755 Cre-Chr11:4765142 2.00E-45 dispersed
Cre05g2473 Cre-Chr5:36111059 Cre08g0476 Cre-Chr8:16373136 1.50E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre05g1232 . 163 363 G2-like Transcription Factor Family AT5G16560 56.5 8.7e-45 178.3
Cre09g1112 . 197 401 G2-like Transcription Factor Family AT5G16560 51.7 1.3e-40 164.5
Cre05g2130 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 5.5e-41 164.9
Cre08g1490 . 53 139 G2-like Transcription Factor Family AT5G42630 83.9 1.4e-36 150.2
Cre05g2473 . 19 256 G2-like Transcription Factor Family AT1G25550 55.1 3.5e-53 205.7
Cre08g0476 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.6e-52 201.4
Cre03g0444 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.7e-60 229.6
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.5e-74 275.0
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.5e-69 257.7
Cre05g0421 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.5e-65 246.1
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre11g1402 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.9e-49 193.0
Cre01g0200 . 1 389 G2-like Transcription Factor Family AT1G79430 53.7 6.5e-84 308.1
Cre02g2184 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 8.0e-74 274.6
Cre05g0421 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.7e-39 159.5
Cre04g1727 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.2e-56 216.1
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.4e-91 333.6
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 3.0e-83 305.8
Cre04g0637 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.7e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53772 None None None None Cre TF