Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2474 ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGGAGTGGCGTCACCAGTGTAGTTCTTGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGCGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCCGTTTCTGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTCGGATCGGAAACGAAACCGATCGTTATCCGGGTTAGATACTGACCCGGATACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTACAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCAAATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGGGCAATGTAA 1047 50.53 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKRNRSLSGLDTDPDTARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTTTGSDMNPVQTVRLFGVDIIKVSPNSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36120339 36121385 - CrPI670011_05g024740.1 Cre05g2474 498987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2474 348 MobiDBLite consensus disorder prediction 160 174 - -
Cre05g2474 348 SMART rav1_2 60 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2474 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2474 348 Gene3D - 176 302 IPR015300 -
Cre05g2474 348 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Cre05g2474 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2474 348 MobiDBLite consensus disorder prediction 158 177 - -
Cre05g2474 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 314 IPR044800 GO:0003700(InterPro)
Cre05g2474 348 SUPERFAMILY DNA-binding pseudobarrel domain 185 279 IPR015300 -
Cre05g2474 348 CDD AP2 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2474 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
Cre05g2474 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677(InterPro)
Cre05g2474 348 MobiDBLite consensus disorder prediction 7 22 - -
Cre05g2474 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677(InterPro)
Cre05g2474 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2474 348 CDD B3_DNA 186 274 IPR003340 GO:0003677(InterPro)
Cre05g2474 348 MobiDBLite consensus disorder prediction 1 30 - -
Cre05g2474 348 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2474 Cre-Chr5:36120339 Cre06g1000 Cre-Chr6:3567285 9.50E-40 dispersed
Cre03g1277 Cre-Chr3:19182165 Cre05g2474 Cre-Chr5:36120339 2.20E-104 transposed
Cre03g1653 Cre-Chr3:32864793 Cre05g2474 Cre-Chr5:36120339 1.00E-44 transposed
Cre06g2098 Cre-Chr6:28776103 Cre05g2474 Cre-Chr5:36120339 1.90E-45 transposed
Cre02g2124 Cre-Chr2:34810046 Cre05g2474 Cre-Chr5:36120339 2.10E-10 wgd
Cre03g0921 Cre-Chr3:7927577 Cre05g2474 Cre-Chr5:36120339 2.10E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53773 PF02362 B3 1.20E-27 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2474 K09287 - csv:101203784 632.098