Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2478 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCATGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTAACCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCGACGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1080 41.39 MCGEDQEEDHHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIMSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSTDHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36175170 36177636 - CrPI670011_05g024780.1 Cre05g2478 498991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2478 359 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983(InterPro)
Cre05g2478 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 226 IPR036638 GO:0046983(InterPro)
Cre05g2478 359 FunFam transcription factor bHLH30 166 229 - -
Cre05g2478 359 MobiDBLite consensus disorder prediction 345 359 - -
Cre05g2478 359 CDD bHLH_AtAIG1_like 166 243 - -
Cre05g2478 359 Gene3D - 166 227 IPR036638 GO:0046983(InterPro)
Cre05g2478 359 MobiDBLite consensus disorder prediction 338 359 - -
Cre05g2478 359 PANTHER TRANSCRIPTION FACTOR BHLH30 145 352 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g2478 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983(InterPro)
Cre05g2478 359 SMART finulus 177 226 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2102 Cre-Chr2:34524865 Cre05g2478 Cre-Chr5:36175170 2.20E-30 dispersed
Cre04g1461 Cre-Chr4:33412221 Cre05g2478 Cre-Chr5:36175170 1.80E-15 dispersed
Cre05g2478 Cre-Chr5:36175170 Cre08g1111 Cre-Chr8:24296236 5.60E-27 dispersed
Cre06g1819 Cre-Chr6:19924420 Cre05g2478 Cre-Chr5:36175170 1.60E-70 transposed
Cre10g1512 Cre-Chr10:29056803 Cre05g2478 Cre-Chr5:36175170 2.70E-38 transposed
Cre11g1091 Cre-Chr11:8368208 Cre05g2478 Cre-Chr5:36175170 3.50E-28 transposed
Cre03g0943 Cre-Chr3:8202964 Cre05g2478 Cre-Chr5:36175170 2.70E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53775 PF00010 HLH 5.70E-13 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2478 - - - 0.0