Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2484 ATGGCTTCCGAGAGCGGTTCCAGATCCAGTTCAGCGGCCGATTCTTATATTGGAAGCTTGATAAGCTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAGTCCCACCAAGCGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAAGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAATAATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTCAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCTATGGGAATTCCTGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCAACCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCATCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCAACAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCCCTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGGGCACCAAGTTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTTTATCGTCCACAGCAATGCCACCAGTAACTGTATCTTCGTCACTCCCATTTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGTTCAGTGGCCAACAAGACAGTAAATTCTGCTCTTCCTCAAGCTCCTCTAAGTACTAATTTGCCATCGCTCTCTCCTTTGACGGCAAGTTCAGATGTCAGTCCTGTTGTGCCTCCAACTACTAACAAAACTACTACAGTTTCTGGTCCAGCATTGTCTTACCAAACTGTCTCTCAATCTACATCCTCTGTTGTTGGAACATCGAACTCTGCTCTCACAGGTGCACCTGCACCTACCCTTATGACTCCGGGACAGCTGTTGCAAACTACTGTAGCCTCTTTATCTTTGCAAACAGTTCAAAAGGACGTTGAGGTGGTTCAAACATCTTCCTCCTTAGCAGCCGAACAAACTGTTCCAGCAGCCGATACTCAGCCACCATTATTACCATTACCGGTGTCTTCACAAGCTATTCATAAGCCAAATGGTTCAACTTCGCAAACTCGGTACATCCACAGGGGACGTGGTAGAGGAAGACGATTTGGGAACTCGCATCAAACAGAAAGATTTACAGAAGATTTTGACTTCACGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACAATGATGGAGACGAAAAGTTCAGTGATGAAGATGATGTCTACGAGGAAGATGATGGTGAATCTTCGAAGTTGGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCGTGCAACAATCCTGACAATGAAGCTCAAAATGGAAGGAGGACCAGATACTACGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGTTTTTCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACGGGAGAGGATACAGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCCCCTACCTACCACTGTACTCTTGGCCGAGCCAAGATCGTTGAGCTGCAGACCGCCTTTCTCTGTCCCCATGGCCGCGGCATTGCCCTCACTCACCCCATTACTTATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGTCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCGCTCCCCTGCCCGCGATGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAATTGGTCTCATTCTCCTCAGCGGGGAAGCAATTTTGGTCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTAGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTCACTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTTACATTGTTGCAAACCAAGAGAAATGTCCCTAGGAAGGGTCCTGAAGCCATGGTTGTAAACAGTCTAGGCTTGGCACTGGCTTTGCTTACTGGAACTGTTATGCTCACTGCCATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACCATTTTTCCCTAATTCAAAGCCCTTACCTTCTTAA 2577 46.37 MASESGSRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSSSLPPPVSGPLPDINSQAMPMGIPGSNFQGGLPLYQPGGNVGSWGASPTPSPPNPSGGGLALPMYWQGYYGPPNGLPHMQQQSLLRPPPGLSLPSSLQQPLQYPNLNASLPTGAPSLLEVPSSLFSANPTTPSLSSTAMPPVTVSSSLPFVLSAPQTSEISSSSVANKTVNSALPQAPLSTNLPSLSPLTASSDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSVVGTSNSALTGAPAPTLMTPGQLLQTTVASLSLQTVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPVSSQAIHKPNGSTSQTRYIHRGRGRGRRFGNSHQTERFTEDFDFTAMNEKFNKDEVWGHLGKNTKSHPKYNDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPDNEAQNGRRTRYYEQIKLDTETFGEFARFRGGRGGFSSGRGGRRGGYYGRGYSHVGRGRGRGMHNYNPLPTTVLLAEPRSLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLVFVWAFAFSSSFGHRSPARDDHLFDVLHPLFMVIGLILLSGEAILVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLIVVTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKFTLLQTKRNVPRKGPEAMVVNSLGLALALLTGTVMLTAISPKYPPSLPTTKQQPFFPNSKPLPS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36216828 36225252 - CrPI670011_05g024840.1 Cre05g2484 498997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2484 858 MobiDBLite consensus disorder prediction 156 175 - -
Cre05g2484 858 MobiDBLite consensus disorder prediction 468 486 - -
Cre05g2484 858 SMART 561_7 666 791 IPR006593 -
Cre05g2484 858 CDD LSm14_N 16 87 IPR025609 -
Cre05g2484 858 Gene3D - 6 92 - -
Cre05g2484 858 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723(InterPro)
Cre05g2484 858 Gene3D - 616 838 - -
Cre05g2484 858 CDD Cyt_b561_ACYB-1_like 660 799 - -
Cre05g2484 858 SMART FDF_2 446 551 IPR019050 -
Cre05g2484 858 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cre05g2484 858 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Cre05g2484 858 FunFam Trailer hitch, isoform C 10 92 - -
Cre05g2484 858 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cre05g2484 858 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Cre05g2484 858 ProSiteProfiles Cytochrome b561 domain profile. 628 833 IPR006593 -
Cre05g2484 858 FunFam Cytochrome b reductase 1 619 840 - -
Cre05g2484 858 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Cre05g2484 858 SMART LSM14_2 10 110 IPR025609 -
Cre05g2484 858 Pfam FDF domain 447 550 IPR019050 -
Cre05g2484 858 PANTHER SCD6 PROTEIN-RELATED 13 586 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Cre05g2484 858 MobiDBLite consensus disorder prediction 468 503 - -
Cre05g2484 858 Pfam Eukaryotic cytochrome b561 666 796 IPR006593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2484 Cre-Chr5:36216828 Cre09g1265 Cre-Chr9:17083777 3.80E-29 dispersed
Cre11g1018 Cre-Chr11:7503153 Cre05g2484 Cre-Chr5:36216828 2.50E-44 wgd
Cre05g2484 Cre-Chr5:36216828 Cre09g1956 Cre-Chr9:38443695 5.80E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2484 K18749 - csv:101205721 906.746