Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2498 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAGTTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTATCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTTGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACCGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCCAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAGCTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAGTTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCGGGACCAAGATGA 1878 43.24 MVQMGIIRIKVSIFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKFALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36409237 36412325 + CrPI670011_05g024980.1 Cre05g2498 499011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2498 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2498 625 ProSiteProfiles Protein kinase domain profile. 305 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2498 625 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Cre05g2498 625 Pfam Protein tyrosine and serine/threonine kinase 308 574 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g2498 625 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Cre05g2498 625 Gene3D Ribonuclease Inhibitor 34 215 IPR032675 -
Cre05g2498 625 SUPERFAMILY Protein kinase-like (PK-like) 283 575 IPR011009 -
Cre05g2498 625 SUPERFAMILY L domain-like 37 198 - -
Cre05g2498 625 Pfam Leucine Rich Repeat 101 122 IPR001611 GO:0005515(InterPro)
Cre05g2498 625 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Cre05g2498 625 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515(InterPro)
Cre05g2498 625 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515(InterPro)
Cre05g2498 625 FunFam Somatic embryogenesis receptor-like kinase 1 382 594 - -
Cre05g2498 625 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524(InterPro)
Cre05g2498 625 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Cre05g2498 625 SMART serkin_6 305 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g2498 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 34 215 - -
Cre05g2498 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 625 - -
Cre05g2498 625 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2498 Cre-Chr5:36409237 Cre09g1792 Cre-Chr9:36378118 2.10E-231 dispersed
Cre05g2494 Cre-Chr5:36345912 Cre05g2498 Cre-Chr5:36409237 7.90E-69 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64174 PF00069 Pkinase 1.10E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2498 - - - 0.0