Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2501 ATGGCAATCTCAAATAGAGTTTATGAAGTGATGATGATGGTTTGTGTTTTCTTTGTTGTGAGCCACAGCTTGTTTGAAACAGGGGAGCCTCCACTGACATTGGATTACTATGCCAAAACCTGTCCCAATGTGTTGCAAGTTGTGAGGAAAGAAATGGAGTGTGCAGTGCTTTCTGAACCACGTAATGCAGCTTTTGTTGTCCGATTACACTTTCACGACTGCTTTGTTCAGGGATGCGACGGGTCGATTCTGTTGGACGACACTATAACATTAGAGGGAGAAAAAAAGGCTTCCAACAACATACACTCCCTCAAAGGCTTTAGAATCATTGATAGGATAAAGAACAGCCTTGAATCAGAATGTCCTGGGATTGTTTCTTGTGCAGATATACTCACTATTGCAGCCAGGGATGCAGTGATTCTGGTGGGTGGCCCTTACTGGGAGGTTCCTCTTGGAAGAAAGGATTCCACAACTGCAAGTTATGAACTTGCAAACACAAATCTTCCCTCTGCCAATGAGGGCCTTCTCAGCATCATCTCCAAGTTTCTTTATCAGGGTCTCTCTGTCACTGACATGGTAGCTCTATCAGGAGCGCACACGATCGGAATGGCGAGGTGCGAGAATTTCAGAGAAAGGATTTATGGGGATTTCGAAGCGACTTCAGATACTAACAACCCGATTTCGAAGTCGTATATTGAGAAGTTGAGGTCAATTTGCCCCCAAGTTGGGAAAGCAGCAGAGAACAACATAACAGCAATGGACAATGTGACACCAGAGCTGTTTGACAACTCTTATTTCCACATGTTGATGAGAGGAGAAGGGGTTTTGAAATCAGACCAAGAATTGTATTCAAGCCTTTTGGGAATGGAAACCAAGGCATTGGTGAAGAAATATGCTGCTGATCCACTTGCTTTCTTTCAGCAATTCTCTGATTCCATGGTGAAGTTGGGAAATATCACCAATTCTGATAGCTTTTTCACTGGGGAAGTTAGGAAAAATTGCAGGTTTATCAACACATAA 1020 43.24 MAISNRVYEVMMMVCVFFVVSHSLFETGEPPLTLDYYAKTCPNVLQVVRKEMECAVLSEPRNAAFVVRLHFHDCFVQGCDGSILLDDTITLEGEKKASNNIHSLKGFRIIDRIKNSLESECPGIVSCADILTIAARDAVILVGGPYWEVPLGRKDSTTASYELANTNLPSANEGLLSIISKFLYQGLSVTDMVALSGAHTIGMARCENFRERIYGDFEATSDTNNPISKSYIEKLRSICPQVGKAAENNITAMDNVTPELFDNSYFHMLMRGEGVLKSDQELYSSLLGMETKALVKKYAADPLAFFQQFSDSMVKLGNITNSDSFFTGEVRKNCRFINT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36431809 36434549 - CrPI670011_05g025010.1 Cre05g2501 499014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2501 339 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cre05g2501 339 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 252 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 FunFam Peroxidase 169 316 - -
Cre05g2501 339 SUPERFAMILY Heme-dependent peroxidases 32 338 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 ProSiteProfiles Plant heme peroxidase family profile. 31 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Cre05g2501 339 Gene3D Peroxidase, domain 2 169 316 - -
Cre05g2501 339 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 Gene3D - 36 338 - -
Cre05g2501 339 FunFam Peroxidase 35 176 - -
Cre05g2501 339 Pfam Peroxidase 48 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 PANTHER PEROXIDASE 72-RELATED 12 337 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre05g2501 339 CDD secretory_peroxidase 32 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2501 Cre-Chr5:36431809 Cre09g1192 Cre-Chr9:14068796 2.00E-79 dispersed
Cre02g2190 Cre-Chr2:35573423 Cre05g2501 Cre-Chr5:36431809 5.50E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2501 K00430 - csv:101216779 612.068