Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2509 ATGGGGTTATGGAGTACTGAAAGTGGTACATTATCTGAAATGGGGAATGTGGATGTAGTTAGGAACCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCAAGGCCATAACAACTCTACTACTTCAAATACCATAGCAATGAGTAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTGTCACATAATATGTTAAAAGGGGGAGTTTACCTACCTAACTTTCCCAGTGTGATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAACGTGCAGCCAGGTTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAGCATTCCTGAGCCTATTGGTGTTTTTTCCAGAGGCATGGGAGTAATACCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTCGGTATCCGGAACTGGAGGACAATCTCAAAGAAACATGGTTAACAGTGAATCTTCCAAGCCTCTTTCTTTGACTAATGAACATGGAGCTACTGAAAGGGGATCACCTAAACATGGAAGCCCTTTGAAATGGGATGATCGTGGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGTCATGATGGTTCGGGTGAGCCATGTACGTTAGAGGCCCCAGGTAAGGAACTTTCTGCCAAGGGCCTCGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAACTACGGTTTCAGCTAAGGACGATGCTGAAACTCAGCGAAAAGGAGATCAAAATCCGAGTTCAACTGCAAACAAGTGTACAGGAAAACATAATAAACAGGTACCTCAACCTTCTGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCGGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTTCAGCGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATTGATGGACTCATAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCACATATGCCCATTGCTTGTCCCCCACCTCATATTTCTCATCATGGACATATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCCCAGATGACTACAAGGTCGGGTGGATTTAAGGATCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCCAATTGTTTAGAAATTGAAGGAGCTGATTCACCAGGCAACACAAAAGTTGAACATTGA 1590 43.52 MGLWSTESGTLSEMGNVDVVRNQDMVGCSSSTAPVVESFSSTIWEQAANCQNLGICNIQGHNNSTTSNTIAMSKASGCPVSLSSDIDRTLDISWNLSHNMLKGGVYLPNFPSVIPPSLSQLPADSSFIERAARFSCFSGGNFGDIVGHFSIPEPIGVFSRGMGVIPERWDEIPRNGLGSVSGTGGQSQRNMVNSESSKPLSLTNEHGATERGSPKHGSPLKWDDRGKHAVDGSANESDEAEFSGHDGSGEPCTLEAPGKELSAKGLGSRKRKRSGQKTELDQANGPLQQTTVSAKDDAETQRKGDQNPSSTANKCTGKHNKQVPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLIAKDILQSRVGPSSTLGFSSHMPIACPPPHISHHGHIPSNFPAIGSSEMLRSTMNSQMTTRSGGFKDPTQIKNVWDGELQNIVQMSFGMSTTPNCLEIEGADSPGNTKVEH 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36511011 36514257 + CrPI670011_05g025090.1 Cre05g2509 499022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2509 529 MobiDBLite consensus disorder prediction 175 331 - -
Cre05g2509 529 FunFam Basic helix-loop-helix transcription factor 340 412 - -
Cre05g2509 529 CDD bHLH_AtBPE_like 333 418 - -
Cre05g2509 529 MobiDBLite consensus disorder prediction 264 278 - -
Cre05g2509 529 MobiDBLite consensus disorder prediction 304 323 - -
Cre05g2509 529 Pfam Helix-loop-helix DNA-binding domain 346 394 IPR011598 GO:0046983(InterPro)
Cre05g2509 529 MobiDBLite consensus disorder prediction 209 245 - -
Cre05g2509 529 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 505 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre05g2509 529 MobiDBLite consensus disorder prediction 179 208 - -
Cre05g2509 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 411 IPR036638 GO:0046983(InterPro)
Cre05g2509 529 Gene3D - 340 413 IPR036638 GO:0046983(InterPro)
Cre05g2509 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983(InterPro)
Cre05g2509 529 MobiDBLite consensus disorder prediction 279 295 - -
Cre05g2509 529 SMART finulus 349 399 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2509 Cre-Chr5:36511011 Cre09g1800 Cre-Chr9:36444904 2.00E-110 dispersed
Cre05g2509 Cre-Chr5:36511011 Cre02g0851 Cre-Chr2:5344030 5.10E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53779 PF00010 HLH 5.80E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2509 - - - 0.0