Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g2509 | ATGGGGTTATGGAGTACTGAAAGTGGTACATTATCTGAAATGGGGAATGTGGATGTAGTTAGGAACCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCAAGGCCATAACAACTCTACTACTTCAAATACCATAGCAATGAGTAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTGTCACATAATATGTTAAAAGGGGGAGTTTACCTACCTAACTTTCCCAGTGTGATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAACGTGCAGCCAGGTTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAGCATTCCTGAGCCTATTGGTGTTTTTTCCAGAGGCATGGGAGTAATACCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTCGGTATCCGGAACTGGAGGACAATCTCAAAGAAACATGGTTAACAGTGAATCTTCCAAGCCTCTTTCTTTGACTAATGAACATGGAGCTACTGAAAGGGGATCACCTAAACATGGAAGCCCTTTGAAATGGGATGATCGTGGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGTCATGATGGTTCGGGTGAGCCATGTACGTTAGAGGCCCCAGGTAAGGAACTTTCTGCCAAGGGCCTCGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAACTACGGTTTCAGCTAAGGACGATGCTGAAACTCAGCGAAAAGGAGATCAAAATCCGAGTTCAACTGCAAACAAGTGTACAGGAAAACATAATAAACAGGTACCTCAACCTTCTGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCGGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTTCAGCGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATTGATGGACTCATAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCACATATGCCCATTGCTTGTCCCCCACCTCATATTTCTCATCATGGACATATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCCCAGATGACTACAAGGTCGGGTGGATTTAAGGATCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCCAATTGTTTAGAAATTGAAGGAGCTGATTCACCAGGCAACACAAAAGTTGAACATTGA | 1590 | 43.52 | MGLWSTESGTLSEMGNVDVVRNQDMVGCSSSTAPVVESFSSTIWEQAANCQNLGICNIQGHNNSTTSNTIAMSKASGCPVSLSSDIDRTLDISWNLSHNMLKGGVYLPNFPSVIPPSLSQLPADSSFIERAARFSCFSGGNFGDIVGHFSIPEPIGVFSRGMGVIPERWDEIPRNGLGSVSGTGGQSQRNMVNSESSKPLSLTNEHGATERGSPKHGSPLKWDDRGKHAVDGSANESDEAEFSGHDGSGEPCTLEAPGKELSAKGLGSRKRKRSGQKTELDQANGPLQQTTVSAKDDAETQRKGDQNPSSTANKCTGKHNKQVPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLIAKDILQSRVGPSSTLGFSSHMPIACPPPHISHHGHIPSNFPAIGSSEMLRSTMNSQMTTRSGGFKDPTQIKNVWDGELQNIVQMSFGMSTTPNCLEIEGADSPGNTKVEH | 529 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36511011 | 36514257 | + | CrPI670011_05g025090.1 | Cre05g2509 | 499022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g2509 | 529 | MobiDBLite | consensus disorder prediction | 175 | 331 | - | - | |
Cre05g2509 | 529 | FunFam | Basic helix-loop-helix transcription factor | 340 | 412 | - | - | |
Cre05g2509 | 529 | CDD | bHLH_AtBPE_like | 333 | 418 | - | - | |
Cre05g2509 | 529 | MobiDBLite | consensus disorder prediction | 264 | 278 | - | - | |
Cre05g2509 | 529 | MobiDBLite | consensus disorder prediction | 304 | 323 | - | - | |
Cre05g2509 | 529 | Pfam | Helix-loop-helix DNA-binding domain | 346 | 394 | IPR011598 | GO:0046983(InterPro) | |
Cre05g2509 | 529 | MobiDBLite | consensus disorder prediction | 209 | 245 | - | - | |
Cre05g2509 | 529 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 118 | 505 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cre05g2509 | 529 | MobiDBLite | consensus disorder prediction | 179 | 208 | - | - | |
Cre05g2509 | 529 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 341 | 411 | IPR036638 | GO:0046983(InterPro) | |
Cre05g2509 | 529 | Gene3D | - | 340 | 413 | IPR036638 | GO:0046983(InterPro) | |
Cre05g2509 | 529 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 343 | 393 | IPR011598 | GO:0046983(InterPro) | |
Cre05g2509 | 529 | MobiDBLite | consensus disorder prediction | 279 | 295 | - | - | |
Cre05g2509 | 529 | SMART | finulus | 349 | 399 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2509 | Cre-Chr5:36511011 | Cre09g1800 | Cre-Chr9:36444904 | 2.00E-110 | dispersed | |
Cre05g2509 | Cre-Chr5:36511011 | Cre02g0851 | Cre-Chr2:5344030 | 5.10E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53779 | PF00010 | HLH | 5.80E-06 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g2509 | - | - | - | 0.0 |