Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2512 ATGTCCAGAGCAATGACGACAAAGCCAATACTGTCTTTGGCTGAACTTATCTTAGTTTCCATCTCAGAAATCGTAGATTCTACAGAGTACACTGAAGAAGAACATGGGAAATTTATTGAGATTGGAAGCTACTTTTATCGAGCAGCTCTGGCTGTTGTGGAGTTGCAGGGAATAGATCCAATGCCATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCATGCAAAGGAACTAGTGGAAAAGTTCCTAAATGGCATTCAACTAGTCTCAGATTCTGATCCAATTACCATTATAAATCCACTAGAAGAGGTGATAAAGGAAATGGGTGAATGCTTGAACAAGATAGCGACCGCTACATTTGAGGAGCAGAATTATGTGAAAATGGCAATTCTATCACTTTCAGATGAGATGAAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATGATGAACATGCAAGAGATTAAAACTTCTTTGAAGGAACAATCAGAAAAAGAACTAGAAGTTATAGAGAAAGATCTATACCCCATTGATATGGACTGGGACACAAACAATACACAATCCCCAGTTGTATCGGAGTTGAGCGAAGGTGTTACAAATACAAATGGAAGAGGAAACCAAATGAAGTATAGCAAGGTTACATCAGCCATGGCAGAACTACCCTCAGTGACCCATTACATAGAACCTCTCTTTGAGACCTTCTGTCCATTGACAAAGAATATCATGGACGATCCAGTTAGCTTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGCTTAAAGAGTTCGAAGAATCCGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGCAATGAGATAGCAACAATCAAAGTCGCCCGGGCCGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGAGTATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGACATGTTACCTTTGCTTGCTAAATTTTTGGAGTACAGAGACAGAGACGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGATAATGATCTGTAACCAATTGGACGTATCAAGAATAATCAATCTATTATCAAGTAGTCACAGGTCCATTCGGGATAGAGCCTTGCTTCTGTTGTTTGAGCTTTCAAGATCCCAGTCATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTCCAATGCTGATCATCATGAAGGACAATAGGTCCGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGAAATCTCCAACGAATATCAAGCATATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATTAGACATGACTGTATGGCATATGTAGCTGAGAGGGCCTCTTCAGTTCTTGTCAAGATGGTGCACGAAGGAGATACATTCGTCCGCAAGGCAGCATTTAAAGCTCTGTTGCAAATTTCATCTCACAGGCCTAATGGTAAAACACTTGCAAAAGCTGGAGCTGTACAAGTCATGGCTGAAGAGATGTTCACTCGTACCATTTGTGATGAACTTAATGATCCAAAAGCAGATGCAACTCAAATACTGGCAAATATATGCGAATCCTGTCTTGATCTTGGGACACTTCAAGTTAACGCTCATGGCTACACTATGAGTTCAGATTATGTAGTCTACAACATTATCGACTTGCTCAAGAACTCAACTCCAGATGAATCTAAATTTAGCACGAGTCTCATCAGAATACTATTATGCTTGACAAAATCTCCAAAACCAATGGACACCCTTGTTTCGGGTGTAAAAAACACTGAAGCATGTGATAGCCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTAGAGCTGCAGCAATAAAACTGCTCATATCGCTGTCCCCTTACATGGGCTTCCCAATGGCAAAAAGACTCTGCAAAGCCAGTGACCAAGTGGAGAACCTTACCAGTAGCATTACCTTGACAAACCAAATCACAGAGAAGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACGAGAGCCTAGCTCTCAACACCATGATTGTAAACAAGAACATCGTGCCCAAGCTCCTGCAAACAATCATTCAAATACAAAGCAGTGGAACAGGAATGAGCAGGTATGCAAGTGCTTTACTAGAAGGTTCGGCGGGAATTCTTGTCAGATTCACAGCAACACTTTATGACCCGCAAATGCTGTTTCTGGCAAAAATTCACAATTTTACATCAGTATTAACTAACCTGCTCACTCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCGCGAGTCTATCCAAGCCCCTGAACATTAAAAGCAACAAGATCATGAAATTTCTCCACTTACCCAAGCTTCTATCGCTAGGTCCATCAAAGAAGGGTTACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAAGCAATTGAAAAGCTATTGACGTGTTTAGACAATGAGAACGAAGAGGTAGTTGAGGCAGCTTTGTCCGCCATTTGTACGCTTGTGGATGAGAAAGTGGATCTGGACAGAAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGGCATGTCCTGAATGTGGTGAGAATGCATAAGCAAGAATCTGTGTGGCATAAATCATTTTGGTTGATCGAGAAGTTCTTGATCAAGGGTGGGGAAGAGTCACTTTCCAATATATCACAGGACAGATCGTTGCCTGCAATATTGGCTACTGCTTCCCATCAAGGGGACAGCGAGACGAGGCGAATAGCAGAAAAGATATTGACCCATTTGAATATGGGTAGTGGAAACGCCCCACCTATATATGACCTCTGTTTGAAGTTGAATAAATCTCGATGTCGACTTTTTCTCTATATTCAGGAGTGGCTAGGTGAAAGATCAAAGGTGAGAACAAAACTTATATTATCTAGAGTGGTTTCAGCAGCAGGAATCATTGGTCTTCCTTTGAAGAAAATGGCTTCTTTCTCGGTGGAGGATTTTGTGGGAAATGGGGTTCTTAAGGATCTGCTTCCCACTTTGCTGGATGAAGGCTGGGATGATGTACCAACCTTGAAGGTCATGAATTCCGAGGATATGGATGCAATAAATATGACACAACAACAAAAGGAAGCAATGGAGATAAGAACTTACCTGCATGACAGATCTCTGATGCAGTATGCAGATAGGCTAGAGTCCTCCGGGAAATGTTTGCCTGAACTTCTAAGCTTAAGCGTTGAAGATTTAACATCTCAATTCCGTATGAAGAGAGGCCATATTGCACGTTTCATTGATAGAAATAGTTCGTGTGTGGATCCCTTGACCAAAAGGTTTGATACCCCTTCCCCATCTACAAGCATCAAGAGGACTTATCAGTCTAACAACTCAAAGAGGATGCAGAGTATGAGAAGCCGAACCTTTCAAGATAAAACAGTTGAGCAAGCACTGAGCGAATTTAAGATCGAAGATGGGTATGTGTTCAAGGGGATTGTTGCAGCAGAACCAGCTGGTCATAGAGCATGCGGTTGTGTGCAACCACCTCCTATTGTTGATAAAGTTGCTCCTTATTCTGCCATTGAAAACATCTCCATTCAGAAATTAACTCCAGAATATAAGATTGGAATGGAGCGTTTGGTGAAGACTAAGACTCCCCCAATGAAAGCATCAGCACTGTGGCAGGATAAGCCAGCCATTATCCTCTGTATTAGACGTCCTGGGTGCATCATGTGCAGAGCAGAAGCTCACCAGCTATATGCCAGAAAACCGATATTTGATGCACTAGGATACCAACTATTCGCTGTAATTCATGAACACATAGAATCAGAGGTGAAAGACTTCTGGCCCAGGTACTGGGGAGGCGCTGTAATCTTTGACCAAGGTAGAGGATTCTTCAAAGCTCTAGGTGGTGGTAAATTAATGAAGGAAAAGTTCCTGTCAGGATTTGTTTTCAACCCTCGGGCAATAGCAAACTATAAGCGTGCAAAAGCAATGGGAGTGAAGCAAAACTTCAATGGAGAAGGGGAAATTAAGGGTGGTCTGTTCATTCTTGGCTCAGCTAAGCGTGGTATTGCTTACCAGTTTATTGAGCGGAACTTCGGGGACTGGGCGCCTCTTTCTGAAGTAATTGAGATCTGTACAAAAATACAGAGCCAGCCACAAGCTCCAGGGGTATCCATCAAACCACCCCAAGAAGATAACCGAAGTTCGTCCCTAGAGTAA 4449 42.05 MSRAMTTKPILSLAELILVSISEIVDSTEYTEEEHGKFIEIGSYFYRAALAVVELQGIDPMPFDEILQSLNKSINHAKELVEKFLNGIQLVSDSDPITIINPLEEVIKEMGECLNKIATATFEEQNYVKMAILSLSDEMKNISTKIVQAQAMMNMQEIKTSLKEQSEKELEVIEKDLYPIDMDWDTNNTQSPVVSELSEGVTNTNGRGNQMKYSKVTSAMAELPSVTHYIEPLFETFCPLTKNIMDDPVSLETGVSYERQAIVEWLKEFEESEEIFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSSISKGKQFNIERIFNFDMLPLLAKFLEYRDRDVRYAVLELLHQMAEINEDNKIMICNQLDVSRIINLLSSSHRSIRDRALLLLFELSRSQSLSDPIGSVTGGIPMLIIMKDNRSDEFASEKADETLRNLEKSPTNIKHMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCMAYVAERASSVLVKMVHEGDTFVRKAAFKALLQISSHRPNGKTLAKAGAVQVMAEEMFTRTICDELNDPKADATQILANICESCLDLGTLQVNAHGYTMSSDYVVYNIIDLLKNSTPDESKFSTSLIRILLCLTKSPKPMDTLVSGVKNTEACDSLIYFISSPDEELRAAAIKLLISLSPYMGFPMAKRLCKASDQVENLTSSITLTNQITEKQALSATFLAKLPHESLALNTMIVNKNIVPKLLQTIIQIQSSGTGMSRYASALLEGSAGILVRFTATLYDPQMLFLAKIHNFTSVLTNLLTQTSSDEVQKLSAIGLEKLSSASASLSKPLNIKSNKIMKFLHLPKLLSLGPSKKGYLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDEKVDLDRSVSLLNEFDTIRHVLNVVRMHKQESVWHKSFWLIEKFLIKGGEESLSNISQDRSLPAILATASHQGDSETRRIAEKILTHLNMGSGNAPPIYDLCLKLNKSRCRLFLYIQEWLGERSKVRTKLILSRVVSAAGIIGLPLKKMASFSVEDFVGNGVLKDLLPTLLDEGWDDVPTLKVMNSEDMDAINMTQQQKEAMEIRTYLHDRSLMQYADRLESSGKCLPELLSLSVEDLTSQFRMKRGHIARFIDRNSSCVDPLTKRFDTPSPSTSIKRTYQSNNSKRMQSMRSRTFQDKTVEQALSEFKIEDGYVFKGIVAAEPAGHRACGCVQPPPIVDKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKASALWQDKPAIILCIRRPGCIMCRAEAHQLYARKPIFDALGYQLFAVIHEHIESEVKDFWPRYWGGAVIFDQGRGFFKALGGGKLMKEKFLSGFVFNPRAIANYKRAKAMGVKQNFNGEGEIKGGLFILGSAKRGIAYQFIERNFGDWAPLSEVIEICTKIQSQPQAPGVSIKPPQEDNRSSSLE 1482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36519747 36528374 - CrPI670011_05g025120.1 Cre05g2512 499025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2512 1482 Pfam AhpC/TSA antioxidant enzyme 1326 1441 IPR032801 -
Cre05g2512 1482 SUPERFAMILY ARM repeat 619 1019 IPR016024 -
Cre05g2512 1482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 315 IPR013083 -
Cre05g2512 1482 ProSiteProfiles HEAT repeat profile. 353 389 IPR021133 -
Cre05g2512 1482 Pfam U-box domain 237 307 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2512 1482 Pfam Armadillo/beta-catenin-like repeat 881 919 IPR000225 GO:0005515(InterPro)
Cre05g2512 1482 Gene3D - 510 690 IPR011989 -
Cre05g2512 1482 SMART Ubox_2 235 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2512 1482 SUPERFAMILY ARM repeat 316 642 IPR016024 -
Cre05g2512 1482 MobiDBLite consensus disorder prediction 1191 1212 - -
Cre05g2512 1482 ProSiteProfiles U-box domain profile. 231 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g2512 1482 SMART arm_5 383 423 IPR000225 GO:0005515(InterPro)
Cre05g2512 1482 SMART arm_5 881 921 IPR000225 GO:0005515(InterPro)
Cre05g2512 1482 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Cre05g2512 1482 SMART arm_5 341 381 IPR000225 GO:0005515(InterPro)
Cre05g2512 1482 SMART arm_5 793 834 IPR000225 GO:0005515(InterPro)
Cre05g2512 1482 Gene3D - 793 1097 IPR011989 -
Cre05g2512 1482 MobiDBLite consensus disorder prediction 1462 1482 - -
Cre05g2512 1482 Gene3D - 316 509 IPR011989 -
Cre05g2512 1482 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1011 IPR052608 -
Cre05g2512 1482 SUPERFAMILY RING/U-box 230 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2512 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2512 Cre-Chr5:36519747 Cre08g0873 Cre-Chr8:21852984 5.00E-114 dispersed
Cre03g0979 Cre-Chr3:8648408 Cre05g2512 Cre-Chr5:36519747 1.20E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29