Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g2519 ATGAGAGCCTTTTCGGTTTCTAAGTGTCTAAAAGTTAACGTTCATTCAAGGACAACTGTAAGTTGTTCATCGAGATTCATGTGTGTGTTGCACTCACATGGCCTCACACTTAATCGACATTTCTGCTATTCTGGTCGATTGTTACTCGACATTTCTGACTGGTGTTACCGACAGATGAAGGATGAAGTGAAATGCAGGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATATGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCAGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTGTTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTACAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTTGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTTATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACCATTATCCAATGTTTATGCAAGGGAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTTCTATGGGTGTAGAGGATAAATTTCCCTCGGAGGAATATTTCAAACTTTATGCCACAGATCATCAACGAAAGGAAAATCATGTCAATGACCCTCATGGGGAGATCTCCCAGCTTTGGAGGCTGCAGCAGACTTATTGA 2745 39.53 MRAFSVSKCLKVNVHSRTTVSCSSRFMCVLHSHGLTLNRHFCYSGRLLLDISDWCYRQMKDEVKCRILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDMLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVVLYNIMIDGYVRLGDIAEAMQLYYRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKGRDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNAFHQQGDNSLVLEFLSMGVEDKFPSEEYFKLYATDHQRKENHVNDPHGEISQLWRLQQTY 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36553565 36558593 - CrPI670011_05g025190.1 Cre05g2519 499032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 281 405 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Cre05g2519 914 Pfam PPR repeat family 634 683 IPR002885 -
Cre05g2519 914 Pfam PPR repeat family 460 508 IPR002885 -
Cre05g2519 914 Pfam PPR repeat family 704 752 IPR002885 -
Cre05g2519 914 Pfam PPR repeat family 565 613 IPR002885 -
Cre05g2519 914 Pfam PPR repeat family 319 367 IPR002885 -
Cre05g2519 914 PANTHER OS03G0856100 PROTEIN 275 612 - -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 497 530 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 462 495 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 357 391 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 567 600 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 672 705 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 742 774 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 602 635 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 707 740 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 814 846 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 637 670 IPR002885 -
Cre05g2519 914 NCBIfam pentatricopeptide repeat 777 810 IPR002885 -
Cre05g2519 914 SUPERFAMILY TPR-like 369 558 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 Pfam PPR repeat 777 805 IPR002885 -
Cre05g2519 914 Pfam PPR repeat 814 842 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Cre05g2519 914 Pfam PPR repeat 420 450 IPR002885 -
Cre05g2519 914 SUPERFAMILY HCP-like 541 760 - -
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 767 908 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 410 560 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 628 698 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 122 280 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 699 766 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 Gene3D Tetratricopeptide repeat domain 561 627 IPR011990 GO:0005515(InterPro)
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Cre05g2519 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 810 844 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g2519 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32